Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02686 ATGGCAAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCACACCAAATCGAAGATGTATTAACTGTAACAGCTTGGGACCACAATACGTGTGCACAAATTTCTGGACGTTTGTTTGCATTAGCTGTAGTGGAATACACCGAGAATTTACACATCGAGTAAAATCAATTTCAATGGCTAAATTTACTGCACAGGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCACGCAAAAGAAATCTATTTTAAAGAATGGGATCCACAACATCATTCTCTGCCTGATAGCAGCAATATTAACAGGCTCCGGGACTTCATTAAGCATGTTTATGTGGATAGAAGATTTACTGGTGACAGAACTTATGACAAACCTCCAAGAGCAAAGGGTGACAAGGACGATGAGAACAAGAGGATGGAGACGTATCCGGGAGGATCCAAAAGCCCTCCATACGATTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAGACAATATGGTGATTACAAGAGAAGCCCTGGTCGTCCTCCAATAGTCAATGATTGGCGTCGAGAAGATAGATTTGGGGATGGACGGAAATTTGAAGATAATAGAATATCCGATGGAAATCATAAGCTGGAAAGCCATTCTCCTGAGCAAACCAGGGATCTGGGTTCTTCCAGCCCACCTGTGGCCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCACTTCGAATTAGTGAACCACCCAAAACAAACGGTGGACAGGCTGCTAATGGCTCAGCACTCACACAGAGAACTGCATCTTCCAGTAGCTTGGCTTCAAGCAATGGAACTGCGGTAGAAGTTAAGCTTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGCTGCCCCAGCAATTCCTCAAGCCCAGCAACCTAATGTGGCTCAACTTGGGATTCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATGTTGCTCCTGAGGCAAAAGCATCTCAGGCTCCTTCAAATGTAAATCCACTTGAATCTGTGCTGACTCAATTGTCAGTACCAGTATCTTTACCTTCTCAGGTGTCTGGAGCGCAAGGACCTGTGTGGGGATCTGCTCTTACCATCACTGCTTCTGGAGCTTCAATTGTTGGCGGCTTCTCAACATTCCCAGCCAGTGGTGCTTCAGTAACATCTGGATTGACAACATCAACTCTCAATAATGCAGGACAGTGGGCTAGTTTGCAGTATCAGCAACATCAACCTTTGTTCACTGCTGCTGGTAGTCAGCCTACTATTCAACAATCTACACCACCAATTGGTGGAGCTTTGAATAATCAGCCCTGGACTGTACCATTGGTACAGGGGCATTCAAGCACACCAATGCCTCATGCATCACACCTTGTCCCAAAGCCTGCCAATGGGGCTAAATCCACTGTTGTTTTACAACCTTCTACAGTAGACACAAAATCAAGTGGAAGAAGTGAGCTTCCTGAGGATCTATTCACTGTAAAATATTCGTCCTTCCCTGCTCGAGTCCCAGGTTGGGAAATGGTTCCACCACCTAGCACGGGTATCTCAATTCAATACAATAATATGATGCCCATGCCAAGTTTTCCTCAACAATCAAAATCAACAAATCCATTTGATATCAGCAACGAACCAACACCATTTCAAGCCCCAACATTTCCTTCCATGTCATCTTTGCAAGGTGCTCTGCCTAGTGTAACACCTTCAGCTACAATTCACCCTTCAAACATGGGTAATCAACCTCTTGCTTGGAATCCACCCTCATCATCATCCTATGTATCAATGCCTCCTCCTCAAGCACAAACTCTTGCACCAGTAATGGGTCCAGGGGCATACATGGGGCAACAAATGGCAACTAACATGCCAATGCAAAGGCATCAAGGAACTGGGAATTTCGCTACTGAGGGAAATGCTTTTGGTTTCTCAAATCCAGATCAGCAGCAGCTGACTGGTAGGTTATATACTGCTGCTACCCCAAACACCTTCCATGCAGGAGGGAACCCTTTCGGATGA 2079 0.4464 MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCISCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQHAKEIYFKEWDPQHHSLPDSSNINRLRDFIKHVYVDRRFTGDRTYDKPPRAKGDKDDENKRMETYPGGSKSPPYDYSDRSSPGGRSPGYDQENRQYGDYKRSPGRPPIVNDWRREDRFGDGRKFEDNRISDGNHKLESHSPEQTRDLGSSSPPVARPVREILGENVVPLRISEPPKTNGGQAANGSALTQRTASSSSLASSNGTAVEVKLETIKSLIDFDDDPEPPAAPAIPQAQQPNVAQLGIPANSNDNNWASFDVAPEAKASQAPSNVNPLESVLTQLSVPVSLPSQVSGAQGPVWGSALTITASGASIVGGFSTFPASGASVTSGLTTSTLNNAGQWASLQYQQHQPLFTAAGSQPTIQQSTPPIGGALNNQPWTVPLVQGHSSTPMPHASHLVPKPANGAKSTVVLQPSTVDTKSSGRSELPEDLFTVKYSSFPARVPGWEMVPPPSTGISIQYNNMMPMPSFPQQSKSTNPFDISNEPTPFQAPTFPSMSSLQGALPSVTPSATIHPSNMGNQPLAWNPPSSSSYVSMPPPQAQTLAPVMGPGAYMGQQMATNMPMQRHQGTGNFATEGNAFGFSNPDQQQLTGRLYTAATPNTFHAGGNPFG 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02686 692 CDD ArfGap_AGFG 12 122 - -
Cca09g02686 692 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Cca09g02686 692 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Cca09g02686 692 MobiDBLite consensus disorder prediction 124 288 - -
Cca09g02686 692 MobiDBLite consensus disorder prediction 190 225 - -
Cca09g02686 692 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Cca09g02686 692 PANTHER ARFGAP/RECO-RELATED 1 692 IPR044820 GO:0005096
Cca09g02686 692 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Cca09g02686 692 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Cca09g02686 692 MobiDBLite consensus disorder prediction 260 288 - -
Cca09g02686 692 MobiDBLite consensus disorder prediction 124 147 - -
Cca09g02686 692 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Cca09g02686 692 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Cca09g02686 692 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Cca09g02686 692 PANTHER ARF GTPASE ACTIVATOR 1 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02686 Cca-Chr9 52460093 52467164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02686 12 122 C2H2 Transcription Factor Family AT4G21160 33.333 1.43e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02686 - - gmx:100781002 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02686 09 52460093 52467164 Cca09g02686 09 52460093 52467164 ECH