Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02683 ATGAAGCAGAAAGAAGCATACTATTACTCCTCCACTACTCTCACACTCTTGCTAGCCACACTCTACTTGGCAGCGTGTGCCTCAGCGCAAGGCAATGTTGGGCAACGCCAGCTTCTCTACTACAGAGACGAGTTCGGCGACAGGGAAGAGAATGTGACGCTAGACCCTTCCCTAGCCTTCGAAAACGACCCTCTCAGAAACGCTTACATAGCCTTGCAGGCTTGGAAGCAAGCCATTTTGTCCGATCCCCACAACCAGACAACCGACTGGGTTGGATCCGATGTTTGCAGCTACACCGGAGTTTACTGTGCTCCCTCGCTCGACAACCCAAAGATCCGCACCGTAGCCGGCATTGATCTCAACCACGGCAACATTGCCGGTTACTTACCCGAAGAGCTTGGCTTGCTCGTCGATCTCGCACTCTTCCATGTAAACTCCAACAGGTTCTGCGGCACTGTGCCGCACAAGTTTGAGAGGCTCAAACTTCTCTACGAGTTGGATCTCAGTAACAACCGCTTCGCAGGGAAGTTCCCTGAGGTGGTGCTGCGGCTTCCCTCGCTCAAATTCTTGGATCTCAGGTTCAATGAGTTCGAAGGGACGGTGCCCAGGGACTTGTTCGATAAGGACCTCGACGCCATTTTCATAAACGACAACCGTTTCGTCTTTGACCTTCCCGACAACTTCGGAAACTCGCCCGTCTCCGTCATCGTGCTCGCTAACAACCATTTCCACGGCTGCATTCCGCCCAGCCTGGGCAACATGTCGAACCTCAACGAGATTATCTTGATGAACAATGCCTTCAGATCCTGCTTGCCCTCGGAGATTGGGCGTTTGAAGAACTTAACGGTGTTCGACGTGAGCATCAACCAGCTGCTGGGTCCGTTGCCGGACGCCGTCGGAAACGCCGTCAGCCTGGAGCAGCTGAATGTGGCGCACAACTTGCTATCGGGTAAAATTCCGGCTAGTATTTGCATGTTGCCAAATCTTCAGAACTTTACCTATTCTTTTAACTTCTTCACCGGCGAGCCTCCGGCGTGCCTCGCCTTGCCGGCGTTTGATGATCAGAGAAACTGCTTGCCGGCCAGGCCTCTTCAGAGGCCTCCGGCGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGACTGTAACTCCTTTAAGTGTAAACCATTTGTTCCTTCACCTTCAACACCTTCACCATCACCATTTCCTTCACCTCCATCTCCTGTAACACCTTCACCATTTCCTTCACCTACAACACCTTCACCTCCATCACCTACGACACCTTCTCCAATTCATACACCTCCATCCCCTTCAACACCTTCACCTACGACACCTTCACCATTGCCTTCCCCAACAACACCTTCTCCAATTCATACACCTCCATCCCCTTCAACACCTTCACCATTTCCTTCACCAACAACACCTTCTCCAATTCATACACCTCCATCCCCTTCAACACCTTCACCTACGACACCTTCACCATTGCCTTCCCCAACAACACCTTCTCCAATTCATACACCTCCATCCCCTTCAACACCTTCACCTACGACACCTTCACCATTGCCTTCCCCAACAACACCTTCTCCAATTCATACACCTCCATCCCCTTCAACACCTTCACCTACGACACCTTCACCATTGCCTTCCCCAACAACACCTTCTCCAATTCATACACCTCCATCCCCTTCAACACCTTCACCTACGACACCTTCACCATTGCCTTCCCCAACAACACCTTCTCCAATTCATACACCTCCATCCCCTTCAACACCTTCACCATTTCCTTCACCAACAACACCTTCGCCAATTCATACACCTCCATCACCTACGACACCTTCACCGCTACCTTCACCTCCATCACCTATAACACCACCAATTCATACACCTCCATCACCCGTAACACCTTCACCAATTCACACACCTCCATCACCTTCAACACCTTCACCACTACCTTCTCCTCCGTCACCTGGAACACCTTCACCTCCATCACCAGGGACACCTTCACCTCCATCACCGGCGACACATCCTTGGCCACCACATTCTTCCCCTGCACCACCTTCTCCGGAGCAACCCTCACCCACTCCAACGCCACCCTACTGTGACCAGTCTCCGCCGCCACCTCCGCCTGCTCCAACATTCTTCCCTCCACCACACCCAAAATCACATCCACCACCTGTTTATCCTCATTTATCACCACCACCACCACACCCATCTCACACTCCTTCCCCTTCACCACCTCCACCGGTTCAATACACTTACCCTTCGCCGCCGCCACCTTCACCGGTTTACCAATCTCCGCCGCCGACAACGCCGCCTCCATGCGAAACTCCACCGGAAGCTTCTCCGCCGCCACCGGTTGTATACAACCCTCCTCCTGCCCCTGTATATGAAGGGCCGTTGCCACCTATCATCGGAGTCCCATACGCATCGCCTCCGCCACCACCCTTTTATTAG 2451 0.5279 MKQKEAYYYSSTTLTLLLATLYLAACASAQGNVGQRQLLYYRDEFGDREENVTLDPSLAFENDPLRNAYIALQAWKQAILSDPHNQTTDWVGSDVCSYTGVYCAPSLDNPKIRTVAGIDLNHGNIAGYLPEELGLLVDLALFHVNSNRFCGTVPHKFERLKLLYELDLSNNRFAGKFPEVVLRLPSLKFLDLRFNEFEGTVPRDLFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNHFHGCIPPSLGNMSNLNEIILMNNAFRSCLPSEIGRLKNLTVFDVSINQLLGPLPDAVGNAVSLEQLNVAHNLLSGKIPASICMLPNLQNFTYSFNFFTGEPPACLALPAFDDQRNCLPARPLQRPPAQCKSFLSKPVDCNSFKCKPFVPSPSTPSPSPFPSPPSPVTPSPFPSPTTPSPPSPTTPSPIHTPPSPSTPSPTTPSPLPSPTTPSPIHTPPSPSTPSPFPSPTTPSPIHTPPSPSTPSPTTPSPLPSPTTPSPIHTPPSPSTPSPTTPSPLPSPTTPSPIHTPPSPSTPSPTTPSPLPSPTTPSPIHTPPSPSTPSPTTPSPLPSPTTPSPIHTPPSPSTPSPFPSPTTPSPIHTPPSPTTPSPLPSPPSPITPPIHTPPSPVTPSPIHTPPSPSTPSPLPSPPSPGTPSPPSPGTPSPPSPATHPWPPHSSPAPPSPEQPSPTPTPPYCDQSPPPPPPAPTFFPPPHPKSHPPPVYPHLSPPPPHPSHTPSPSPPPPVQYTYPSPPPPSPVYQSPPPTTPPPCETPPEASPPPPVVYNPPPAPVYEGPLPPIIGVPYASPPPPPFY 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02683 816 Gene3D Ribonuclease Inhibitor 67 229 IPR032675 -
Cca09g02683 816 Gene3D Ribonuclease Inhibitor 230 359 IPR032675 -
Cca09g02683 816 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Cca09g02683 816 SUPERFAMILY L domain-like 69 350 - -
Cca09g02683 816 MobiDBLite consensus disorder prediction 392 793 - -
Cca09g02683 816 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 33 532 - -
Cca09g02683 816 PRINTS Proline rich extensin signature 392 404 - -
Cca09g02683 816 PRINTS Proline rich extensin signature 407 423 - -
Cca09g02683 816 PRINTS Proline rich extensin signature 427 439 - -
Cca09g02683 816 PRINTS Proline rich extensin signature 439 460 - -
Cca09g02683 816 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 33 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02683 Cca-Chr9 52426164 52428614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02683 1 386 Trihelix Transcription Factor Family AT4G18670 71.000 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02683 - - gmx:100814585 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02683 09 52426164 52428614 Cca09g02683 09 52426164 52428614 ECH