Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02682 ATGAGTGCTCTCTCTAACTCCGGTGGTGGTGGCCACGACAACTCCTTCCTCAAGATACCCACCATCAACTTTACCAAGCTCTTTATCAATGGACATTTTGTTCATTCCATATCAGGAAGAACATTTGAGACTATAGATCCAAGAACAGAGGAGGTAATTGCAAGAGTTAGTGAAGGAGATAAAGAAGACATAGATATTGCTGTTAAAGCTGCACGTGAGGCATTTGATTCAGGTCCATGGCCTCGCTTGCCCGGCTCTGAAAGGGCAAAAATTCTGATGAAATGGGCAGAGCTAATTGAAGAAAACATAGAGGAACTAGCGGCATTAGACACAATTGATGGTGGAAAGCTGCATTTTTTTAATAAGGCTGTGGAAATTCCTTCAGCTACAAATGCGCTACGTTACTATGCGGGTGCTGCTGATAAAATTCACGGCGATGTACTAAAAATGAACGGGGAGTTCCATGCGTATACACTGTTGGAACCAGTTGGTGTGGTGGGACACATAATCCCATGGAATGCCCCTTCCCTCACCTTTTTCATCAAGGTTAGCCCTTCCTTAGCCGCAGGTTGCACCATGGTCCTCAAGCCTGCTGAACAAACACCTCTCTCTGCTTTGTTTTATGCTCATCTAGCTAAGTTGGCTGGAATCCCAGATGGAGTGCTCAATGTAGTGCCCGGATTTGGACCAACTGCTGGAGCAGCAATAAGCTCACACATGGACATAGATGCGGTCAGTTTTACTGGTTCAATTGAAGTTGGGCGTGAAGTGATGCAAGCTGCAGCTAGGAGCAATTTAAAACCGGTTTCACTTGAATTAGGAGGCAAGTCTCCTCTCATTATTTTTGATGATGCGGATATAGACAAAGCTGCTGAGCTTGCTCTCTTTGGCATCCTTTTTAACAAGGGAGAAGTTTGTGTTGCAAGTTCTCGTGTGTTCGTCCAAGAAGGGATCTACGATGAATTTGAGAAGAAGTTGGTGGAGAAGGCAAAATCTTGGGTCGTTGGGGATCCTTTTGATCCCAAATCGCAGCAAGGGCCTCAGGCTGACAAGAACCAATTGGAGCAAATACTTTCGTATATTGAGCATGGAAAGAAAGAAGGAGCCACCCTTTTGACCGGAGGTAATAAAGTTGGCAACAAAGGTTACTACATTCAACCTACAATTTTCTCTAATGTAAAGGAGAACATGATTATAGCACAAGATGAAATATTTGGCCCAGTACTGTCGCTGATGAAATTTAAGACAATGGAAGAAGCAATTAAAAGTGCTAATAATACAAAGTATGGCCTGGCGGCAGGGATTGTGACAAAAAATATTGATAGAGCAAACACAGTGTCAAGGTCCATTCGTGCAGGGGTTGTTTGGATAAACTGTTATTTTACTATAGGGAGTGATGTTCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTTGGGAATGGAGGCCCTTCACAAGTACTTACAAGTTAAATCTGTTGTTACACCCATTCACAATTCTCCTTGGCTTTGA 1518 0.4328 MSALSNSGGGGHDNSFLKIPTINFTKLFINGHFVHSISGRTFETIDPRTEEVIARVSEGDKEDIDIAVKAAREAFDSGPWPRLPGSERAKILMKWAELIEENIEELAALDTIDGGKLHFFNKAVEIPSATNALRYYAGAADKIHGDVLKMNGEFHAYTLLEPVGVVGHIIPWNAPSLTFFIKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDAVSFTGSIEVGREVMQAAARSNLKPVSLELGGKSPLIIFDDADIDKAAELALFGILFNKGEVCVASSRVFVQEGIYDEFEKKLVEKAKSWVVGDPFDPKSQQGPQADKNQLEQILSYIEHGKKEGATLLTGGNKVGNKGYYIQPTIFSNVKENMIIAQDEIFGPVLSLMKFKTMEEAIKSANNTKYGLAAGIVTKNIDRANTVSRSIRAGVVWINCYFTIGSDVPFGGYKMSGFGRDLGMEALHKYLQVKSVVTPIHNSPWL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02682 505 SUPERFAMILY ALDH-like 19 500 IPR016161 GO:0016491
Cca09g02682 505 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 271 278 IPR029510 GO:0016491
Cca09g02682 505 Pfam Aldehyde dehydrogenase family 36 495 IPR015590 GO:0016491
Cca09g02682 505 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 7 505 - -
Cca09g02682 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 29 493 IPR016162 GO:0016491
Cca09g02682 505 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 275 464 IPR016163 GO:0016620
Cca09g02682 505 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE RF2C 7 505 - -
Cca09g02682 505 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 299 310 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02682 Cca-Chr9 52410632 52415039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02682 17 505 Aldehyde Dehydrogenase Gene Family AT3G24503 70.204 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02682 K12355 - gmx:100527654 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02682 09 52410632 52415039 Cca08g00164 08 2281163 2308635 PCT