Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02681 ATGACTTCCCTTACTAACACTAACGGCGATGCTGCCTCCGTCAACAACCTCCCCACCGTCACCTTCACCAAGCTCTTCATTAACGGAGATTTTGTTGACTCTGTCTCAGGAAAGACATTTGAGACAATAGATCCGAGAACAGGAGAAGTGATAGCTCTGATCAGCGAGGGAGAGAAAGAAGACATAGACATTGCTGTTAAAGCAGCACGTCACGCTTTTGATTCTGGTCCATGGCCTCGCCTCCCCGGTGCTGAGAGAGCAAAAATTTTGATGAAATGGGCACAACTAATTGATGAACACGCAGAGGAACTTGCGGCACTAGATACGATTGATGCGGGGAAGTTGTACCACATGTGTAGGAACGTGGAAGTTCCTGCAGCAGCAAGCACTTTGCGTTACTATGCAGGTGCTGCTGATAAAATTCACGGAGAGGTGTTGAAAATGTCCCGAGAGTTCCACGCTTATACATTGCTGGAACCAGTTGGTGTTGTGGGACACATCATTCCCTGGAACTTCCCCAACACCATGTTCTACATCAAGGTTGGACCTTCTCTAGCTGCTGGCTGCACCATGGTCCTTAAACCTGCAGAGCAAACACCCCTTTCTGCTTTGTATTCTGCTCATCTTGCTAAATTGGCTGGACTCCCTGATGGAGTGCTCAATGTTGTGCCCGGATTCGGCCCAACTGCTGGTGCTGCATTAAGCTCACACATGGATGTTGATGCGGTTAGCTTTACTGGTTCAACGAAAACAGGTCGTGAGATCATGCAGGCTGCAGCTAAGAGTAACTTGAAACAAGTTACACTTGAATTAGGAGGCAAGTCACCCCTCATAATTTTTGATGATGCTGATATAGACAAAGCTGCAGAGCTTGCTCTAATTGGCATCCTATATAACAAGGGAGAAGTTTGTGTTGCAAGTTCCCGTGTGTTCGTTCAAGAAGGGATCTATGATGAATTTGAGAAAAAATTAGTGGAAAAGGCAAAAGCTTGGGTAGTTGGAGACCCCTTTGATCCTAAAGTTCAACAAGGACCTCAGTGTAACAAGACACAATTTGAAAAAGTTCTTTCATATATCGAGCATGGAAAGAGAGAAGGAGCTACCCTTTTGACCGGGGGTAAAACAGTGGGAAACAAAGGCTACTTCATTGAACCGACAATTTTCTCCAATATTAAGGAGGATATGCTTATAGCACAAGATGAAATATTTGGCCCTGTTCTGGCGTTGAAGAAGTTTAAGACCATTGAGGAAGCAATTAAGAGTGCTAACAATACTAAGTACGGCCTAGCAGCAGGCATAGTGACAAAGAATATTGATACAGCAAACACAGTGTCAAGGTCCATTCGTGCAGGCACCGTTTGGATCAATTGCTATTTTGCTTTCGGCGATGATGTTCCCTTTGGAGGGTATAAGATGAGTGGATTTGGAAAAGATCATGGATTGGAAGCCCTTCACAAATACCTGCAAGTTAAATCTGTTGTTACTCCCCTTTATAATTCTCCTTGGCTTTGA 1512 0.4464 MTSLTNTNGDAASVNNLPTVTFTKLFINGDFVDSVSGKTFETIDPRTGEVIALISEGEKEDIDIAVKAARHAFDSGPWPRLPGAERAKILMKWAQLIDEHAEELAALDTIDAGKLYHMCRNVEVPAAASTLRYYAGAADKIHGEVLKMSREFHAYTLLEPVGVVGHIIPWNFPNTMFYIKVGPSLAAGCTMVLKPAEQTPLSALYSAHLAKLAGLPDGVLNVVPGFGPTAGAALSSHMDVDAVSFTGSTKTGREIMQAAAKSNLKQVTLELGGKSPLIIFDDADIDKAAELALIGILYNKGEVCVASSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQCNKTQFEKVLSYIEHGKREGATLLTGGKTVGNKGYFIEPTIFSNIKEDMLIAQDEIFGPVLALKKFKTIEEAIKSANNTKYGLAAGIVTKNIDTANTVSRSIRAGTVWINCYFAFGDDVPFGGYKMSGFGKDHGLEALHKYLQVKSVVTPLYNSPWL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02681 503 SUPERFAMILY ALDH-like 17 499 IPR016161 GO:0016491
Cca09g02681 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 6 503 - -
Cca09g02681 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491
Cca09g02681 503 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 6 503 - -
Cca09g02681 503 Pfam Aldehyde dehydrogenase family 31 493 IPR015590 GO:0016491
Cca09g02681 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620
Cca09g02681 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
Cca09g02681 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02681 Cca-Chr9 52401380 52406711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02681 4 503 Aldehyde Dehydrogenase Gene Family AT3G24503 68.463 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02681 K12355 - gmx:100811540 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02681 09 52401380 52406711 Cca08g00161 08 2232016 2236937 PCT