LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g02681	ATGACTTCCCTTACTAACACTAACGGCGATGCTGCCTCCGTCAACAACCTCCCCACCGTCACCTTCACCAAGCTCTTCATTAACGGAGATTTTGTTGACTCTGTCTCAGGAAAGACATTTGAGACAATAGATCCGAGAACAGGAGAAGTGATAGCTCTGATCAGCGAGGGAGAGAAAGAAGACATAGACATTGCTGTTAAAGCAGCACGTCACGCTTTTGATTCTGGTCCATGGCCTCGCCTCCCCGGTGCTGAGAGAGCAAAAATTTTGATGAAATGGGCACAACTAATTGATGAACACGCAGAGGAACTTGCGGCACTAGATACGATTGATGCGGGGAAGTTGTACCACATGTGTAGGAACGTGGAAGTTCCTGCAGCAGCAAGCACTTTGCGTTACTATGCAGGTGCTGCTGATAAAATTCACGGAGAGGTGTTGAAAATGTCCCGAGAGTTCCACGCTTATACATTGCTGGAACCAGTTGGTGTTGTGGGACACATCATTCCCTGGAACTTCCCCAACACCATGTTCTACATCAAGGTTGGACCTTCTCTAGCTGCTGGCTGCACCATGGTCCTTAAACCTGCAGAGCAAACACCCCTTTCTGCTTTGTATTCTGCTCATCTTGCTAAATTGGCTGGACTCCCTGATGGAGTGCTCAATGTTGTGCCCGGATTCGGCCCAACTGCTGGTGCTGCATTAAGCTCACACATGGATGTTGATGCGGTTAGCTTTACTGGTTCAACGAAAACAGGTCGTGAGATCATGCAGGCTGCAGCTAAGAGTAACTTGAAACAAGTTACACTTGAATTAGGAGGCAAGTCACCCCTCATAATTTTTGATGATGCTGATATAGACAAAGCTGCAGAGCTTGCTCTAATTGGCATCCTATATAACAAGGGAGAAGTTTGTGTTGCAAGTTCCCGTGTGTTCGTTCAAGAAGGGATCTATGATGAATTTGAGAAAAAATTAGTGGAAAAGGCAAAAGCTTGGGTAGTTGGAGACCCCTTTGATCCTAAAGTTCAACAAGGACCTCAGTGTAACAAGACACAATTTGAAAAAGTTCTTTCATATATCGAGCATGGAAAGAGAGAAGGAGCTACCCTTTTGACCGGGGGTAAAACAGTGGGAAACAAAGGCTACTTCATTGAACCGACAATTTTCTCCAATATTAAGGAGGATATGCTTATAGCACAAGATGAAATATTTGGCCCTGTTCTGGCGTTGAAGAAGTTTAAGACCATTGAGGAAGCAATTAAGAGTGCTAACAATACTAAGTACGGCCTAGCAGCAGGCATAGTGACAAAGAATATTGATACAGCAAACACAGTGTCAAGGTCCATTCGTGCAGGCACCGTTTGGATCAATTGCTATTTTGCTTTCGGCGATGATGTTCCCTTTGGAGGGTATAAGATGAGTGGATTTGGAAAAGATCATGGATTGGAAGCCCTTCACAAATACCTGCAAGTTAAATCTGTTGTTACTCCCCTTTATAATTCTCCTTGGCTTTGA	1512	0.4464	MTSLTNTNGDAASVNNLPTVTFTKLFINGDFVDSVSGKTFETIDPRTGEVIALISEGEKEDIDIAVKAARHAFDSGPWPRLPGAERAKILMKWAQLIDEHAEELAALDTIDAGKLYHMCRNVEVPAAASTLRYYAGAADKIHGEVLKMSREFHAYTLLEPVGVVGHIIPWNFPNTMFYIKVGPSLAAGCTMVLKPAEQTPLSALYSAHLAKLAGLPDGVLNVVPGFGPTAGAALSSHMDVDAVSFTGSTKTGREIMQAAAKSNLKQVTLELGGKSPLIIFDDADIDKAAELALIGILYNKGEVCVASSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQCNKTQFEKVLSYIEHGKREGATLLTGGKTVGNKGYFIEPTIFSNIKEDMLIAQDEIFGPVLALKKFKTIEEAIKSANNTKYGLAAGIVTKNIDTANTVSRSIRAGTVWINCYFAFGDDVPFGGYKMSGFGKDHGLEALHKYLQVKSVVTPLYNSPWL	503

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca09g02681	503	SUPERFAMILY	ALDH-like	17	499	IPR016161	GO:0016491
Cca09g02681	503	PANTHER	ALDEHYDE DEHYDROGENASE-RELATED	6	503	-	-
Cca09g02681	503	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	27	491	IPR016162	GO:0016491
Cca09g02681	503	PANTHER	NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN	6	503	-	-
Cca09g02681	503	Pfam	Aldehyde dehydrogenase family	31	493	IPR015590	GO:0016491
Cca09g02681	503	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	273	462	IPR016163	GO:0016620
Cca09g02681	503	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	269	276	IPR029510	GO:0016491
Cca09g02681	503	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	297	308	IPR016160	GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g02681	Cca-Chr9	52401380	52406711	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g02681	4	503	Aldehyde Dehydrogenase Gene Family	AT3G24503	68.463	0.0	733

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g02681	K12355		-	gmx:100811540	932.939

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g02681	09	52401380	52406711	Cca08g00161	08	2232016	2236937	PCT

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