Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02673 ATGGCCCTTTATTTATTAGATAATGAAGCTGATGCACAGCAGCAGTCAGAACCACAAATTCAGCCTTTATCTGCAAATGGAATTTCTCATGCAGGTATTGGTACTCAGGTTGTTCCGTATGCAACACCTCCACAGCTTGGAACTGGACATGCTGTGGCACCGCCCACTTACCCATATCCAGATTCGTACTACAGAAGTATCTTTACTCCCTATGATGCACAAACTTATCCCCCACAACCCTATGGTGGAAATCCAATGGTACATTCTAATTTTTTTGATGTTTGCAATATTGTGGCTTCTTGTTATGATTCTCATATTATCGAATTATATATCCTGGGTCAGGTCCATCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCACGGTATATTAAGACGTAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAAGCTGCAAGGAACCGGAAGCCATACTTTCATGAACCTCGACATTTGCATGCACTAAGGAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAAATGAGAATGAGCAGGATGAGGTTGCATCAGCTGAGGAATCACAGTCCAATATCAATCTCAATTCTGATAAAAACGAGCTTGCGCCATCAGATAGAACATCCTAA 693 0.4156 MALYLLDNEADAQQQSEPQIQPLSANGISHAGIGTQVVPYATPPQLGTGHAVAPPTYPYPDSYYRSIFTPYDAQTYPPQPYGGNPMVHSNFFDVCNIVASCYDSHIIELYILGQVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYFHEPRHLHALRRARGCGGRFLNSKKNENEQDEVASAEESQSNINLNSDKNELAPSDRTS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02673 230 MobiDBLite consensus disorder prediction 206 224 - -
Cca09g02673 230 MobiDBLite consensus disorder prediction 150 172 - -
Cca09g02673 230 MobiDBLite consensus disorder prediction 152 168 - -
Cca09g02673 230 PRINTS CCAAT-binding transcription factor subunit B signature 168 191 IPR001289 GO:0003700|GO:0006355
Cca09g02673 230 PRINTS CCAAT-binding transcription factor subunit B signature 137 159 IPR001289 GO:0003700|GO:0006355
Cca09g02673 230 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 7 212 - -
Cca09g02673 230 ProSiteProfiles NF-YA/HAP2 family profile. 134 194 IPR001289 GO:0003700|GO:0006355
Cca09g02673 230 ProSitePatterns NF-YA/HAP2 subunit signature. 139 159 IPR018362 GO:0003677|GO:0016602
Cca09g02673 230 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 212 IPR001289 GO:0003700|GO:0006355
Cca09g02673 230 SMART cbf3 133 194 IPR001289 GO:0003700|GO:0006355
Cca09g02673 230 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 136 191 IPR001289 GO:0003700|GO:0006355
Cca09g02673 230 Gene3D - 134 195 - -
Cca09g02673 230 MobiDBLite consensus disorder prediction 189 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02673 Cca-Chr9 52322089 52324029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02673 11 230 CCAAT-HAP2 Transcription Factor Family AT1G30500 49.545 3.03e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca09g02673 CBFB_NFYA 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02673 K08064 - gmx:100809036 356.681