Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02665 ATGCTTTCCCTCTCCGTCTTCCCCACACTCCCATCGCTTCAAAACCCTAACTTGGCCCGTGCCCACCTCTTCAATTTCATCAATTTCCCTCTAAATTCAACGCTTCCGTTACCACCACTCTCTCACCGCACAATCCTCTGCAAAGCGTTCAGGGATTCCGGCAAGGACATCAAGGCGGTGCTCAAGTCcgacgacgggggcggcggcggcggcggcggtgacggtgacggtgacggtggGGACGACAAGGATGCCGAGAAGAAAGAAGGGTCCTCGGGGCCTTTGCCGGAATGGTTGAATTTTACTGCTGATGACGCCAAAACGGTGCTTGCGGCAATTGCAATATCGCTCGCGTTTCGCACGTTCGTGGCGGAGCCGAGGTACATTCCCTCGCTGTCAATGTATCCTACGTTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCATACTATTTTAGAAAACCATGTGCAAGGGACATAGTGATATTTAAAAGCCCTCCGGTGCTTCAAGAAGTTGGATATAGCGATGATGATGTTTTTATAAAGCGTGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTTCGTAAAGGGCATCTTTTTGTTAATGGGGTTGAGAGGAATGAAGACTACATCCTTGAACCACCTGCTTATGAGATGAAACCCATCCGTGTGCCAGAGAAGTACGTGTTTGTGATGGGAGACAACCGCAATAACAGCTATGATTCCCACGTGTGGGGTCCTCTGCCAGCGAAGAACATCATAGGTAGATCAGTATTTCGCTATTGGCCACCAAATAGAGTTGCCGGCACAGTATCTAAGGAAACTTGCTCGGTTGAAACCTCCCAGGAGACTGCACTGCCATCTCCATGA 873 0.4536 MLSLSVFPTLPSLQNPNLARAHLFNFINFPLNSTLPLPPLSHRTILCKAFRDSGKDIKAVLKSDDGGGGGGGGDGDGDGGDDKDAEKKEGSSGPLPEWLNFTADDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCARDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLFVNGVERNEDYILEPPAYEMKPIRVPEKYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRVAGTVSKETCSVETSQETALPSP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02665 290 PANTHER SIGNAL PEPTIDASE I 86 275 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca09g02665 290 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 86 275 - -
Cca09g02665 290 TIGRFAM sigpep_I_bact: signal peptidase I 107 265 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca09g02665 290 ProSitePatterns Signal peptidases I serine active site. 131 138 IPR019756 GO:0004252|GO:0016021
Cca09g02665 290 SUPERFAMILY LexA/Signal peptidase 120 269 IPR036286 -
Cca09g02665 290 Pfam Signal peptidase, peptidase S26 106 263 IPR019533 GO:0004252|GO:0006465
Cca09g02665 290 PRINTS Bacterial leader peptidase 1 (S26A) family signature 122 138 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca09g02665 290 PRINTS Bacterial leader peptidase 1 (S26A) family signature 181 193 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca09g02665 290 PRINTS Bacterial leader peptidase 1 (S26A) family signature 225 244 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca09g02665 290 MobiDBLite consensus disorder prediction 76 91 - -
Cca09g02665 290 Gene3D Umud Fragment, subunit A 119 213 - -
Cca09g02665 290 Gene3D Umud Fragment, subunit A 217 279 - -
Cca09g02665 290 MobiDBLite consensus disorder prediction 61 96 - -
Cca09g02665 290 ProSitePatterns Signal peptidases I signature 3. 230 243 IPR019758 GO:0004252|GO:0016021
Cca09g02665 290 CDD S26_SPase_I 125 257 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02665 Cca-Chr9 52247448 52250353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02665 134 264 MADS-box Gene Family AT1G29960 33.333 2.40e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02665 K03100 - gmx:100815810 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02665 09 52247448 52250353 Cca09g02665 09 52247448 52250353 ECH