Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02659 ATGGGGGAAGGTGAAGGTGAAGGTCAGGGGAGTGATTGCGCTCCCAAGAATGTTTCAAACGACGCCGTTCCCAATGCGTCCGATCCGCCTCCTGCTGCTGTCAGGGTCGGGAAACCAGAATCTCCAAAATCAAGATCAAGGCCTGGCTTTGACATTAAAGAAGCTACTCCAAAGAAGCAGAAGCAGTGCAACTGTAAACATTCAAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGATGGTTGCAACTGTGTCAATTGTTTCAACAATGTGGAAAATGAAGCTGCTAGACGAGAAGCAGTTGAAGCTACTTTGGAACGCAATCCAAATGCATTTAGGCCAAAAATTGCAAGCAGTCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAGTTTTGATATTGGGAAAGCACAACAAGGGGTGCCACTGTAAAAAATCTGGGTGCCTTAAGAAGTACTGTGAGTGCTTCCAAGCGAACATTCTTTGTTCCGAAAATTGTAAATGCATGGACTGCAAAAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCGGCCAATGCCGCCATAACTGGAGCTATTGGTTCCTCTGGTTTTTCATCACCACCAATATCAAAGAAAAGAAAAGGTCAAGAACTCTTGTTTGGGCCAACCGTCAAGGATCCATCAGTCGGTAGGCTGGGACAACAGGCAAACAATGTCAGAGTTCCTGCACCCTCCTCATCCTTGTCTCCTGTCCCAGGTGCTCGTGCTGGACCTGCAACGTTAGGTCCTTCAAAATTGATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAACACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGACATTTACAGACCAGAAAAATTTAATGGATAAGCACGCAGAAGATCAGACAGAAACTTCTCTTGCTTCTTCAACTCAGGAGCAATTACCAAGCCAAAAGGAAGCTAATGTTGAGAAGGCTATGGCTGATGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCAGATAATTCTTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCTATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATACAATGTTCATGACTGGTGCCTCCCCTGTTGGATCAAGGGCGCATGCTTGCAACACATCTTTGCAACCACCTTATGGACAAGGAATGACAGAGGTCTATGCAGAGCAAGAAAGGATTGTATTAACGAAATTTAGAGATTTTCTCAATAGGGTTATCACTATGGGAGAAATTAATGAAACAAAGTGTTCTTCATTAGCCAGAAGTGAATTAGAGAGTCAAAAGGACCCAAACATGAATTGCACCGGAAATGCCAGTACTGAGACAGTGCATCAGCAGGGAGCCACTAATAACGGTGTTGCCAAAGCTGCGGGCACCGATGTTACTCTTACTTCTACATCTTTGTTCCCTGGTAGTCTTGTTCCTGAAAATGGGGATACTTATCCGAAGAAGGTTGAAAAATAG 1596 0.4436 MGEGEGEGQGSDCAPKNVSNDAVPNASDPPPAAVRVGKPESPKSRSRPGFDIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGFSSPPISKKRKGQELLFGPTVKDPSVGRLGQQANNVRVPAPSSSLSPVPGARAGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHAEDQTETSLASSTQEQLPSQKEANVEKAMADDDCSSANQTDKISPDNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTGASPVGSRAHACNTSLQPPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPNMNCTGNASTETVHQQGATNNGVAKAAGTDVTLTSTSLFPGSLVPENGDTYPKKVEK 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02659 531 MobiDBLite consensus disorder prediction 322 390 - -
Cca09g02659 531 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 60 95 IPR005172 -
Cca09g02659 531 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 146 180 IPR005172 -
Cca09g02659 531 SMART CXC_2 58 98 IPR033467 -
Cca09g02659 531 SMART CXC_2 143 184 IPR033467 -
Cca09g02659 531 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 30 503 - -
Cca09g02659 531 ProSiteProfiles CRC domain profile. 59 183 IPR005172 -
Cca09g02659 531 MobiDBLite consensus disorder prediction 1 53 - -
Cca09g02659 531 MobiDBLite consensus disorder prediction 357 371 - -
Cca09g02659 531 MobiDBLite consensus disorder prediction 330 345 - -
Cca09g02659 531 PANTHER TESMIN/TSO1-RELATED 30 503 IPR028307 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02659 Cca-Chr9 52203289 52209954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02659 32 469 CPP Transcription Factor Family AT4G29000 64.706 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Cca09g02659 TCR 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02659 - - gmx:100786353 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02659 09 52203289 52209954 Cca09g02659 09 52203289 52209954 ECH