Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02658 ATGGATCCTCCGCCGAAGAGCTGGAGCATCCATACCCGAGCAGAGATAATCGCGAAATACGAGGTGATGGAGCGGGTGGGCTCCGGAGCCTACGCCGACGTCTACCGCGGCCGTCGCCTCTCCGACGGCCTCATCGTCGCCCTCAAGGAGATCCACGACTACCACTCCGCCTTCCGAGAAATCCACGCCTTGCAACTCCTCCAGGGCTCCCCAAACGTCGTCGTTTTGCACGAATACTTCTACCGCGACGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCCGCACCGACTTGGCCACCGTCATCTCCGACGCCGCCAAGGCCAACCTGCCCCTCCCCCCCGCCCACCTCAAGCGCTGGATGCTCCAGATTCTCTCCGGCCTCCACGCCTGTCACCGCCACATGGTCCTCCACCGAGATTTGAAGCCCTCCAATCTCCTCATTTCCGAACACGGCCTCCTCAAGATCGCTGATTTTGGACAGGCAAGGATTCTCACGGAGGCTGGATTTGACGCTTCTATTGATAATGAAGAATATTCTAGAGTTTTAGATGACACTCATAATAAGGATATGAATACTAACATTTATGATGGAAATGCAACATGCACCATAAGTGACATAGATAGggaagaggaagaggaggaagaggaagggaaAAAACTTGGTTGTTTCACATCATGCGTTGGGACACGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGGTCTAGAGACTATGGTTTGGAGGTCGATTTGTGGTCCTTGGGATGTATCTTTGCGGAGCTTTTAACTCTGCAACCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTTAGCAGAATCATTAGTGTTTTGGGTAACCTAGATGAGAGTGCTTGGGTTGGATGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTCTTGAAGCATGTTTGGCCAATCGGTCCCCTGATGAAGTGGCTCTGGTGAAGAGACTGGTTTGTTATGATCCAGCTAAGAGGGCTACAGCAATGGAACTGCTTAATGACAAGTACTTTAGAGAAGAGCCTCTTCCTGTTCCTGTTTCTGAGCTGCGAGTTCCTCTGACCAGGAAAGGGCAAGATGAGGATTCCCGTTCCCCTCGTGAGTGGGATGATTTCGATGAAGATTCTGATTTTGATGAGTTTGGTCCTCTCAATTTCACAAGGACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1242 0.4976 MDPPPKSWSIHTRAEIIAKYEVMERVGSGAYADVYRGRRLSDGLIVALKEIHDYHSAFREIHALQLLQGSPNVVVLHEYFYRDDEDAVLVLEFLRTDLATVISDAAKANLPLPPAHLKRWMLQILSGLHACHRHMVLHRDLKPSNLLISEHGLLKIADFGQARILTEAGFDASIDNEEYSRVLDDTHNKDMNTNIYDGNATCTISDIDREEEEEEEEGKKLGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIISVLGNLDESAWVGCSKLPDYGIISFSKVENPAGLEACLANRSPDEVALVKRLVCYDPAKRATAMELLNDKYFREEPLPVPVSELRVPLTRKGQDEDSRSPREWDDFDEDSDFDEFGPLNFTRTGTGFSIQFP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02658 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Cca09g02658 413 Gene3D Phosphorylase Kinase; domain 1 11 105 - -
Cca09g02658 413 MobiDBLite consensus disorder prediction 367 397 - -
Cca09g02658 413 SMART serkin_6 20 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02658 413 PANTHER CYCLIN-DEPENDENT KINASE 10 13 378 - -
Cca09g02658 413 Gene3D Transferase(Phosphotransferase) domain 1 106 356 - -
Cca09g02658 413 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Cca09g02658 413 Pfam Protein kinase domain 20 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02658 413 SUPERFAMILY Protein kinase-like (PK-like) 13 359 IPR011009 -
Cca09g02658 413 MobiDBLite consensus disorder prediction 369 386 - -
Cca09g02658 413 ProSiteProfiles Protein kinase domain profile. 20 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02658 413 PANTHER CELL DIVISION PROTEIN KINASE 13 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02658 Cca-Chr9 52192450 52194446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02658 4 413 Core Cell Cycle Gene Families AT4G28980 55.556 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Cca09g02658 Pkinase 6.9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02658 - - gmx:100801952 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02658 09 52192450 52194446 Cca09g02658 09 52192450 52194446 ECH
Cca09g02658 09 52192450 52194446 Cca08g00129 08 1830618 1833194 PCT