Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02656 ATGACCACCGTAACGGTCACCACTCGAGCACAGATcctccgccacaccgccgcattcacttccgccctcctctcccaatcccaactccgccgccgcctcgtcgccactctcctccgccacactccaccctccgaccAAAAGCACCTCAACCTCGCCGCTGACACTCTCGAAAACGCGATTTCCTTCTCCAGCCCCGCCCTCCGCTCCTCCTCCCTCTCCCTCGCCGAGAAGctcctcctccctctccccgacttccccctctcctcgctcctcctctctctcatcCACGCCCTCCGCAACCGCCCTACCGAATCCGCCACATTCCTCCTCCGAATCTTCCACTCCAACAACGCTTCCCTCGCCAGATCCGAAATCGCTCCCGCGCTCTACGAGCGCCTCTTCTCTCTCCACCTCTTCCCCGTGTTCCGATGGTTCGACGACCACAGGACGCAGATCCTCTCCACCTCCAGCCGCGACGACGCCGACGATTGCGATTGCGATTACTCCGTTTCCGTGGTGCTGCCTTGCGCGAAGGTGCTGTCGAAGATGAGCGAGGAGCAGGCCACGAAGCTGAGAGAGGTGGAGAGGGAGTACGAGGAGGTTCTGGACCAGAACTGCAGGGTTCTGGCGACGTACTTCAAAGAGGTTTTGGCCTGCGAAAACGGTGACGCGGCGGTTAGTCCACCGTCGCTGATTCTGAAGAGCAGCGGCAGGGAAGACAGGAAGGAGGAGATGACGCAGATGAATGTGATGGCGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAGTATCTATTGAATTTTTGAGCCGCAGTTCCAGCAGCAGATCTTCCCACGCACCATTTTATCCTCAAAGAGTCTTTTCCGGAGTCCTTAAACCCCAGAATTCTTCAAAATCTTCGACAACGCCAGTCTATTTAAAGTTAAACTCAACCGCTGAAATTGATTTTTCTTTAGATGAGAGTTTGCTGAGTTCTTCTTCAGATTCTGAGGCAGAAAATGAGGAAAAGGACAAAAATATTGCATTGTTGGATCCTCGACAAAGCCAAATTCAAGAACAAATGCTAACCATCTTCAAACAATCCAGGGGTTCCCCAGATTATCATATGGCAGATTGCGAAACCCCGCTGCATGGAAATGGGAAACATGCACCTCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCTGTGACTCTTGAAACTGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTCAACCTGTCCCATCACACGCCAGAATCTGCAAAACACCCAGCTACCCAAAACAAATTATGTGCTCAAAAGACTAATTGCTAGCTGGAAAGAACGAAACTCCCATTTGGTCCCACCGCCATATGAGAGTCCATACGAAGATACCGAGGCAGTAGTGAAGTCAACAATGCCCTCAACTTCTCCTAATAGCGTTATAACACAAGCCACAGTTGATGGGATGATGAGTGAGTTACGCTGTGCAATCAATAACCTGTATATGTCAGAGGTTCTTCAGGAATCTGAAATGGCCGTGCTTCAAATTGAGAAGTTCTGGAGAGGAGTGGATCTAGGAGTGGATATCCATAGCATGCTATCAAAACCTGCGATAATCAATGGATTTATGGAGATCCTTTTCAATTCTGTTGAGCCACAGGTGCTACAAGCAGCAGTTTTCCTTCTGGCGGAAATGGGGTCTAGGGACAATGCTGTTGTTAAGACTCTCACACGTGTGGACACTGACATGGAGTGTATCATGGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGCTGTTGTATCTCCTAAACCCTTCCAATATGGACCTTGCAGAGATGGCAGTAGTGGAGTCTCTCATAACAGTTTTCAATAAGAAAGAGGAAGAGTTGGTTAAGATGTGTTTAAAGCCCAAAACAGCTTCAGTGCTTTTACTAGCACGGATTATTGGAAGCAGTGAAGAGATAATTGCATCTTCGGTTGTCAATACCCTTTTCTCAGAAAAAGCAATTGGAATTATTGTCGGCAGTTTGGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTGGAGATTTTGTTGAGATGCATGGAAGAAGATGGGACTTGCAGGAACAACATTGCTGAGAAAGCAGAGTTGTCACCTCTTTTGGAAACCTTAATCGGTGCAACTGATGGAGACCGTTTCAAGATTATTAAATTTTTTACTGAGTTAGTCAAGTTAAATAGGCGGACATTTAACGAACAAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACACTCCTTATTTATCTGCAGACAGCCCTTCAAGATCAATGTCCAGTTATGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAAATGAGCATATACCGGGAAGAGGCAATGGATACTCTTATTTCATGCCTGAGAAACACAGATTTCCCCGTTACCCAATTAGCAGCAGCTGATACAATTATGTCACTGCAAGGGAGTTTCGACTTCGCTGGAAGCCCTCTAATCAGAGAAGTCCTTCTTAAACGCGCAGGTATCAAAAAAAGTTCCACAAGTCTTGTACAGGTGGATCAGATCAGCAACTTCAGCCCAGATATTGATATAACTCCAGAAGAAGAGAAGGCTGCTGATGATTGGGAAAGAAGAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGCACTCTTTTTGAGGCTTTAGCAGATGGCATAAAGAGCCGAAATCCAGAACTACGATCAGCATGCTTTATATCAGCCACATGGCTCATATACATGTTAACTATTCTACCAGATACAGGGATACAAGTAGCAGCCCGTGCCTGCTTGTTGAAGCAGTTCATAGCTAAATTAAATTCTGCTAAGGATGTAGAAGACAGAATCCTCTCTGTGCTTGCTGTCAATAGCTTTCTTCATTTCTCTGACGGCTTAGGCGATCTAACTTCCTACACTAAGGATATCTTAAAAGGGTTGAGAGAGCTAAAGAGATTTTGTCCCTTAGCATCTAAAATGCAAAAGGTTCTGGTGGATGAAAACGAATCTAAAGCGGACATTTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGCGAGAATGGAGAGGTGCTGTCTGTCATTTGCTTTAAGGATAAATTTTTTTCAGGCCACACAGATGGCACTATTAAGGTCTGGACATTAAAGGATAACTTATTCGATCTGTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAACTTGGTGATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGATCGAACTGCAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTATACAGGTGCATGATATGAAGGACCAGATTCATAATTTAATTGTAACCAATAGCTTAGCTTGTTTCATTCCGCAGGGGACTGGTATCAAGGTTCTGTCTTTGAATGGAGAATCAAAGTTGTTAAATTCTAGTAAATATGTGAAGTGCTTGGCTCATGTTCATGGAAAACTATACTGTGGATGTCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTCAATACTATTCAAAATGGTTATAAGAGATTACTTGGGAAAGCAAATCCTATTCATGCACTGCAAATTCATGGTGAACTTATATATGCAGCTGGCGCTTCCTTAGATGGATCTGCGATAAAGATATGGAACAATTCCAATTACAGTATGGTTGGATCACTGCAAACTGGATCTGAAGTGCGGGCTATGGCAGTGAGCTCAGAATTGATCTATTTGGGGTGCAAAGGAGGTTCTGTGGAAATTTGGGATAAGATGAAACACCATAGAGTTGACACGTTGCAAATGGGCACAAATTGTAAGGTTAATTGTATGGCTTTAGACAGCAATGAAGAAGTTTTGGTAATAGGAACCTCAGATGGACAGATTCAGGTTTGGGGAATGAATTAA 3981 0.4263 MTTVTVTTRAQILRHTAAFTSALLSQSQLRRRLVATLLRHTPPSDQKHLNLAADTLENAISFSSPALRSSSLSLAEKLLLPLPDFPLSSLLLSLIHALRNRPTESATFLLRIFHSNNASLARSEIAPALYERLFSLHLFPVFRWFDDHRTQILSTSSRDDADDCDCDYSVSVVLPCAKVLSKMSEEQATKLREVEREYEEVLDQNCRVLATYFKEVLACENGDAAVSPPSLILKSSGREDRKEEMTQMNVMANGRYNPIWSEREVSIEFLSRSSSSRSSHAPFYPQRVFSGVLKPQNSSKSSTTPVYLKLNSTAEIDFSLDESLLSSSSDSEAENEEKDKNIALLDPRQSQIQEQMLTIFKQSRGSPDYHMADCETPLHGNGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQNLQNTQLPKTNYVLKRLIASWKERNSHLVPPPYESPYEDTEAVVKSTMPSTSPNSVITQATVDGMMSELRCAINNLYMSEVLQESEMAVLQIEKFWRGVDLGVDIHSMLSKPAIINGFMEILFNSVEPQVLQAAVFLLAEMGSRDNAVVKTLTRVDTDMECIMALFKNGLTEAVVLLYLLNPSNMDLAEMAVVESLITVFNKKEEELVKMCLKPKTASVLLLARIIGSSEEIIASSVVNTLFSEKAIGIIVGSLGADLAKERIAAVEILLRCMEEDGTCRNNIAEKAELSPLLETLIGATDGDRFKIIKFFTELVKLNRRTFNEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPVTQLAAADTIMSLQGSFDFAGSPLIREVLLKRAGIKKSSTSLVQVDQISNFSPDIDITPEEEKAADDWERRIASVLVSHEFGTLFEALADGIKSRNPELRSACFISATWLIYMLTILPDTGIQVAARACLLKQFIAKLNSAKDVEDRILSVLAVNSFLHFSDGLGDLTSYTKDILKGLRELKRFCPLASKMQKVLVDENESKADIWIHKELIKEDCSENGEVLSVICFKDKFFSGHTDGTIKVWTLKDNLFDLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTAKVWSIGKAAIHCIQVHDMKDQIHNLIVTNSLACFIPQGTGIKVLSLNGESKLLNSSKYVKCLAHVHGKLYCGCHDSSVQEIHLATGTVNTIQNGYKRLLGKANPIHALQIHGELIYAAGASLDGSAIKIWNNSNYSMVGSLQTGSEVRAMAVSSELIYLGCKGGSVEIWDKMKHHRVDTLQMGTNCKVNCMALDSNEEVLVIGTSDGQIQVWGMN 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02656 1326 Gene3D - 1141 1326 IPR015943 GO:0005515
Cca09g02656 1326 SMART Ubox_2 389 453 IPR003613 GO:0004842|GO:0016567
Cca09g02656 1326 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1325 - -
Cca09g02656 1326 SMART WD40_4 1034 1071 IPR001680 GO:0005515
Cca09g02656 1326 SMART WD40_4 1076 1115 IPR001680 GO:0005515
Cca09g02656 1326 SMART WD40_4 1284 1324 IPR001680 GO:0005515
Cca09g02656 1326 SMART WD40_4 1202 1242 IPR001680 GO:0005515
Cca09g02656 1326 SMART WD40_4 1245 1281 IPR001680 GO:0005515
Cca09g02656 1326 SUPERFAMILY WD40 repeat-like 1055 1325 IPR036322 GO:0005515
Cca09g02656 1326 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1325 - -
Cca09g02656 1326 Pfam U-box domain 387 458 IPR003613 GO:0004842|GO:0016567
Cca09g02656 1326 CDD RING-Ubox_PUB 390 432 IPR045210 -
Cca09g02656 1326 ProSiteProfiles U-box domain profile. 385 460 IPR003613 GO:0004842|GO:0016567
Cca09g02656 1326 MobiDBLite consensus disorder prediction 326 347 - -
Cca09g02656 1326 Pfam WD domain, G-beta repeat 1079 1115 IPR001680 GO:0005515
Cca09g02656 1326 ProSiteProfiles Trp-Asp (WD) repeats profile. 1083 1116 IPR001680 GO:0005515
Cca09g02656 1326 Coils Coil 688 708 - -
Cca09g02656 1326 SUPERFAMILY ARM repeat 506 1007 IPR016024 -
Cca09g02656 1326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1083 1116 - -
Cca09g02656 1326 SUPERFAMILY RING/U-box 385 463 - -
Cca09g02656 1326 Coils Coil 184 204 - -
Cca09g02656 1326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1292 1326 - -
Cca09g02656 1326 Gene3D - 1034 1140 IPR015943 GO:0005515
Cca09g02656 1326 ProSiteProfiles Trp-Asp (WD) repeats profile. 1292 1326 IPR001680 GO:0005515
Cca09g02656 1326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 461 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02656 Cca-Chr9 52174705 52182685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02656 387 473 U-box Gene Family AT5G42340 45.977 2.78e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02656 - - gmx:100808867 2193.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02656 09 52174705 52182685 Cca09g02656 09 52174705 52182685 ECH