Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02655 ATGAATAGAGGTGTCTTGCAAAGCTCACCGGTGCAACAAATGATGGCCGGAAACCCTAACAACTGGTGGAACATCAACActcctcctcctcctcctcctcctcaacctcctcaaccctctcctcctttcttctccactccctccAACTTTTTAACTCCTTATAACCCCACTTCTTCTCTTCCTCTTCCTTCTTGGCTTGACAACAATCAAGACCTACCCGAGTCATGGAGCCAGCTACTCATGAGTGGGATATTGGTGCCTGAAGAAGAGAAAGGGAGCATGTGCCAGGTTGAGTCTAAGAAGTTGGAGAACTGGGAGGAACAAATGCTGAGTCAGGCTCCAAGTGCTTCTATTAAGCAAGAAAGTTCCGTGAACAGCTATGTGTATGGACATGGAAATGAAGAGTTTCAAGCAGCAAAGCCAACATGGTCTCAAATAGTGCCTTCTTCTTCTCCTAAATCCAGTGTAACAAGTTTCAGCAGCAGCATGTTGGATTTCTCTAACACAGATGCCAGGCCTCCTCCACCAGATCCATCCTCAGAGTGCAATAGCAGTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGACCACAACTCAGTCGACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCATTTGGAAAGACTGACACGGCGTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCACCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGTTGGTGAATGAAAACTGTTTGAAGAGGAAAGCAGCTAGTGAGCAGGATTCTCAAGAAGAACCAAAGAAGGACCTGAAGAGCAGAGGGTTGTGCCTTGTTCCAGTTTCATGCACACTGCAAGTTGGAAGTGAGAATGGAGCTGATTATTGGTCTCATGCTTTTGGTGGGGGATTTCGGTAG 1032 0.4302 MNRGVLQSSPVQQMMAGNPNNWWNINTPPPPPPPQPPQPSPPFFSTPSNFLTPYNPTSSLPLPSWLDNNQDLPESWSQLLMSGILVPEEEKGSMCQVESKKLENWEEQMLSQAPSASIKQESSVNSYVYGHGNEEFQAAKPTWSQIVPSSSPKSSVTSFSSSMLDFSNTDARPPPPDPSSECNSSAAGGAFKKARVQPTTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRHQQSVQGEKNCIFPEDPGQLVNENCLKRKAASEQDSQEEPKKDLKSRGLCLVPVSCTLQVGSENGADYWSHAFGGGFR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02655 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Cca09g02655 343 MobiDBLite consensus disorder prediction 24 46 - -
Cca09g02655 343 PANTHER OS05G0228400 PROTEIN 17 329 - -
Cca09g02655 343 MobiDBLite consensus disorder prediction 1 49 - -
Cca09g02655 343 MobiDBLite consensus disorder prediction 164 204 - -
Cca09g02655 343 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 329 - -
Cca09g02655 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 256 IPR036638 GO:0046983
Cca09g02655 343 MobiDBLite consensus disorder prediction 1 23 - -
Cca09g02655 343 CDD bHLH_AtbHLH_like 204 253 IPR045239 -
Cca09g02655 343 Gene3D - 203 256 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02655 Cca-Chr9 52155944 52159574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02655 1 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 45.272 7.66e-70 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02655 - - gmx:100785156 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02655 09 52155944 52159574 Cca09g02655 09 52155944 52159574 ECH
Cca09g02655 09 52155944 52159574 Cca08g00122 08 1775557 1779272 PCT