Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02653 ATGCCTGAGGCATTGGAAGAGGGTGCTTCAATGAAAGGAGGGTTGAACCTGAAGGCTACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGAGAGGGAGGGTGTGTTCAAGAGTGGAGCCAAGAGGGGTTTCTCTGATGCCATTGATGGGAACTGGAATGCTGGATCTGAAGTTGCTTTGGGTAAAGATGCTGCCTTGTTCTCTCTCACTGCTACAGACTGCACAAACAAACCAACTGCTGTTCTCAAGGAAACTCTTCCACACTCTCCAAAACCATTGCATGACAAGAAGCCCCAGATTTCTGCTCCAGCTGCTAAGGCACAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTTCTCAGCCAACTCAAAAGAATGATGCTGATGCAGAAGCCAAGTCTGGATGTCTTTATGTAAAAGTCAGCATGGAAGGTGCCCCATATTTGAGGAAAGTGGATCTCAATAGTTTTGGCACTTACAAGGATCTCTCTTTGGCACTTGAAAAAATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGGGTTTCTAGTCGGGAAAATCTAAGTGAGAGCAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACTTATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGATGTTCATCGAGTCTTGCAAGCGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAGAAGTGCAAAAGTCGCAACTAG 798 0.4637 MPEALEEGASMKGGLNLKATELRLGLPGCESPEREREGVFKSGAKRGFSDAIDGNWNAGSEVALGKDAALFSLTATDCTNKPTAVLKETLPHSPKPLHDKKPQISAPAAKAQVVGWPPIRSFRKNSMASQPTQKNDADAEAKSGCLYVKVSMEGAPYLRKVDLNSFGTYKDLSLALEKMFSCFTISQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIESCKRLRIMKSSEAIGLAPRAMEKCKSRN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02653 265 Pfam AUX/IAA family 20 256 IPR033389 -
Cca09g02653 265 SUPERFAMILY CAD & PB1 domains 142 246 - -
Cca09g02653 265 ProSiteProfiles PB1 domain profile. 145 247 IPR000270 GO:0005515
Cca09g02653 265 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 258 IPR003311 GO:0005634|GO:0006355
Cca09g02653 265 Gene3D - 139 259 - -
Cca09g02653 265 PANTHER AUXIN-INDUCED PROTEIN 11 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02653 Cca-Chr9 52106441 52109466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02653 148 255 B3 DNA Binding Superfamily AT4G23980 29.630 1.90e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca09g02653 AUX_IAA 1.5e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02653 K14484 - gmx:100778529 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02653 09 52106441 52109466 Cca09g02653 09 52106441 52109466 ECH
Cca09g02653 09 52106441 52109466 Cca08g00121 08 1735611 1739332 PCT