Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02648 ATGGAACGCATCGTTGGTGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGCGAAATCTACCTCGCGACGCATATCGACACCTTCGAGATCGTCGCCGTCAAAATCGAGAATAGTAAAACAAAGCATCCGCAACTGCTTTATGAGGCAAAGCTCTATAATATTCTTCAAGGAGGAAGTGGTATTCCAAACATAAAATGGTCTGGCGTAGATGGAGAGGATAATGTGCTTGTTCTTGACTTGCTTGGGCCGAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGAATAGAATATGCGCACTCTAAAGGATTTTTACATAGGGATATTAAACCTGATAACTTTCTCATGGGACTTGGGCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCGAAGCGTTATCGGGACTCCACTACCAATCGCCACATTCCTTACAGGGAGAACAAAAACCTAACGGGTACTGCCCGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGGCGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTCAGGGGAAGCCTTCCTTGGCAAGGTCTGAAGGCTGCTACTAAGAAACAAAAGTATGATAAAATATGTCAGAAGAAATTATCAACTCCTATTGAGGTATTATGCAAATCTCATCCTGTGGAGTTTGCTTCGTACTTCCATTACTGCCACTCTTTGACATTTGATCAGCGACCTGATTATGGATTCTTAAAGCGCCTATTTCGGGACTTATTTGCTCGAGAAGGTTATGAATTCGATTATGTCTTTGATTGGACCATTTTAAAGTACCAGCAATCTCAAAAGAATGTAGTGCTCCCTCCATTATCTCCAGTTCCAGGAGCAAGTAACAGTCGAGCAATTCCAATGGATATTGATAATCATCAAGGGCATGTTAAAGAGCGTATTAGAGTGGGCGATGCTGCTAGTTCTGGTGTTAAAATTCAGTTTAAGTCACCAGCAGTGAAAAATTTTAGTCATGAGAACCCACTTGACAAAAATATTTTTGGAGAAGCAAATATTCCCTCTACTTCATATTCTCCTACTAGTACTTCAAAAAGGAACTCCTTGAAGCCATCGTTCGCATGTCTTCTGCTAAATGAATGCCAAATACTCTGTGAAGCTTTAAAGAAGATTCCGTGCATCTTTTCCTGA 1248 0.4159 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPNIKWSGVDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYAHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDYVFDWTILKYQQSQKNVVLPPLSPVPGASNSRAIPMDIDNHQGHVKERIRVGDAASSGVKIQFKSPAVKNFSHENPLDKNIFGEANIPSTSYSPTSTSKRNSLKPSFACLLLNECQILCEALKKIPCIFS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02648 415 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Cca09g02648 415 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02648 415 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02648 415 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cca09g02648 415 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02648 415 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Cca09g02648 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cca09g02648 415 PANTHER CASEIN KINASE-RELATED 1 391 - -
Cca09g02648 415 CDD STKc_CK1_delta_epsilon 8 282 - -
Cca09g02648 415 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02648 Cca-Chr9 52066035 52070503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02648 9 234 EF-hand Containing Proteins AT4G23650 28.879 9.12e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Cca09g02648 Pkinase 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02648 K08960 - gmx:100779936 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02648 09 52066035 52070503 Cca09g02648 09 52066035 52070503 ECH
Cca09g02648 09 52066035 52070503 Cca08g00112 08 1553778 1559143 PCT