Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02637 ATGGCTGAGCCTCCAAGCTCAGAGTTTGAGATAATAAGCACTGCCACTACTGCTACTACCACCCGTAAGCACTCCTCTTCGGAGGCCCAGTTAGCCGGCCCGGATCACAAAAAGCCCAAGCAGGCCCCAGACAGCAGCAGCAAGCACCCCGTGTACAGAGGGGTCCGAATGCGGGCCTGGGGAAAGTGGGTATCCGAAATCCGCGAGCCCAGGAAGAAGAACCGGATCTGGCTGGGCACCTTCGCCACCGCCGAGATGGCCGCGCGTGCGCACGACGTGGCGGCGCTCGCCATCAAAGGCACCTCCGCCATTCTGAACTTCCCCCAGCTGGCCGCCTCCCTGCCCCGCCCGGAATCCAACTCGCCGCGGGACGTTCAGGCCGCCGCAGCGAAAGCCGCCGCCATGGAGGGCGTGGATGGGCCGAGGAcgccgtcgctgtcgcagtcgtcttcgtcgtcgtcgtcgtcgttggcggcgGTTTCGGAGGAGGCGTCGACGGCGGATGAGCTGGGGGAGATCGTGGAGCTGCCGAGCCTGGGAACGTGTTTCGAAATACCGGACCCAGGTAAGGAGGTGGTGTTTTTGGAGCCGGTGGATGGGTGGCCCTATTCTCAACCGTGGTGTGACGGCATTTATGATGACAGGGATTGTGGGGATCCGATTTCCATGCACGACTCTGAGAGCTTCATTCTTTGTGGCTTTGAGGCTGACTTCACTTCCTTGTGGCACCATTAA 735 0.5701 MAEPPSSEFEIISTATTATTTRKHSSSEAQLAGPDHKKPKQAPDSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGTSAILNFPQLAASLPRPESNSPRDVQAAAAKAAAMEGVDGPRTPSLSQSSSSSSSSLAAVSEEASTADELGEIVELPSLGTCFEIPDPGKEVVFLEPVDGWPYSQPWCDGIYDDRDCGDPISMHDSESFILCGFEADFTSLWHH 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02637 244 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Cca09g02637 244 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Cca09g02637 244 MobiDBLite consensus disorder prediction 1 52 - -
Cca09g02637 244 MobiDBLite consensus disorder prediction 9 28 - -
Cca09g02637 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 215 - -
Cca09g02637 244 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Cca09g02637 244 MobiDBLite consensus disorder prediction 114 161 - -
Cca09g02637 244 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Cca09g02637 244 MobiDBLite consensus disorder prediction 29 44 - -
Cca09g02637 244 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 13 215 - -
Cca09g02637 244 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
Cca09g02637 244 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Cca09g02637 244 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Cca09g02637 244 MobiDBLite consensus disorder prediction 142 161 - -
Cca09g02637 244 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02637 Cca-Chr9 51988054 51989743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02637 14 218 AP2-EREBP Transcription Factor Family AT5G11590 52.607 2.70e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca09g02637 AP2 9.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02637 K09286 - gmx:100778201 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02637 09 51988054 51989743 Cca09g02637 09 51988054 51989743 ECH
Cca09g02637 09 51988054 51989743 Cca08g00103 08 1420762 1421888 PCT