Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02627 ATGGGTCGTCGTAAGATAGAGATTAAGGAAGTGAAGGATCCGAACACAAAGCAAGTTACATTTTCGAAGCGTCGAACAGGTTTATTTAGAAAAGCAAATGAATTATCCATCTTGTGTGGAATAGAAATTGCTATTATTGTGTTCTCTCCTGGTAACAAGCCTTACTCTTTTGGGCACCCAAGTGTTGATGCTGTGACGGCTAAGTTTCTTCAACAAGAGCCTAAATCAAATAATGAAGTTGGTCATGACATTGACATGGAAACACTCAACAAACAACTATTTGATGTTCAAGCTCAAATCCGTAAGGAACAAAAGAAGGCCGCGAAGCTTGATGCACGCATGAAACAACATAAGGTCACCCAACTCTCTCACCAACAATTGAAAGATTCATTTTCAGAACTTCAATACAATGTGAAGGACTATATTGATGCCATCGAGGTCTCAGAATGTATGATGCTCCTCGCTAAAGAACCCGTAGTTGGCATAAAAAAACAAGTTTCAAAGAAAAAATGA 513 0.386 MGRRKIEIKEVKDPNTKQVTFSKRRTGLFRKANELSILCGIEIAIIVFSPGNKPYSFGHPSVDAVTAKFLQQEPKSNNEVGHDIDMETLNKQLFDVQAQIRKEQKKAAKLDARMKQHKVTQLSHQQLKDSFSELQYNVKDYIDAIEVSECMMLLAKEPVVGIKKQVSKKK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02627 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g02627 170 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Cca09g02627 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g02627 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g02627 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g02627 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Cca09g02627 170 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 166 - -
Cca09g02627 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g02627 170 Coils Coil 86 120 - -
Cca09g02627 170 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Cca09g02627 170 PANTHER MADS BOX PROTEIN 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02627 Cca-Chr9 51903497 51904022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02627 1 156 Type I MADS-box Gene Family AT2G34440 37.500 6.99e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca09g02627 SRF-TF 3.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02627 - - gmx:100791127 222.631