Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02625 ATGGGTCGTCGTAAGATCGAGATTGTGATGGTAAAGAATCCCAATACAAGACAGGTCACATTCTCGAAGCGACGAACTGGCTTATTCAAAAAAGCGAATGAATTATCCATTTTGTGTGGAGTGGAAATTGCTATTGTTGTGTTCTCTCCAGGGAACAAACCTTACTCTTTTGGGCACCCTAGTGTCGATGTTGTTGCAGCCAAATTTCTTCAACAAGAGTCCGATTCAAACGATGATGCCCAAGAAAACAACCCATTTAATGAAGCTGCTCAAATTCATACCTTGAATCAACAATTGTGTGATGTTCAGGCCCAAATACGTGAAGAAGAAAAGAAGGGTGCAAAGCTTGATGAGGGACTCGAACAATACCAAGTCACACAACCCTCTCAATCTCAATATAAAGAATTGCAAGATTCATTTTTAAAGCTCCAGTGCAGGGTCAAGGACTGTCTTGATGCAATTGAGGTATCAGAATGTATGATGCTCCTTCGCCAAGAGCCAGTTGTGGGAATTACAAGAAGAAGAAGAAAGAATTGA 537 0.4097 MGRRKIEIVMVKNPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSPGNKPYSFGHPSVDVVAAKFLQQESDSNDDAQENNPFNEAAQIHTLNQQLCDVQAQIREEEKKGAKLDEGLEQYQVTQPSQSQYKELQDSFLKLQCRVKDCLDAIEVSECMMLLRQEPVVGITRRRRKN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02625 178 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 173 - -
Cca09g02625 178 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Cca09g02625 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Cca09g02625 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g02625 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g02625 178 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cca09g02625 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g02625 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g02625 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g02625 178 PANTHER MADS BOX PROTEIN 2 173 - -
Cca09g02625 178 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02625 Cca-Chr9 51872348 51873032 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02625 1 163 Type I MADS-box Gene Family AT2G34440 40.000 1.02e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca09g02625 SRF-TF 2.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02625 - - gmx:100791127 249.21