Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02624 ATGGGTAGCGACAACGTTAACCTCACCGTTTCAGAGAGCACCAACAACATTGTGTGGATGCCTCTGTCGGTATCAACATCCAACAGTTCCATAGATTTGGAAGCTTTTGATCTGGACGAGGCTCTCGGCCTCGCGGTGGTAGACGGAGAGTCACGCCGTCCATTTATGGCGTGGGAGAGCTTCGTCTCCAACTTGCCTACCGTTAACCACGTGAAACGGGACGACGTTTGCTCCGTTTGCATGGAAGGGTTCACCCTGCGCAACACGGATGAGGAAAACAAACGAGTCCCGTGCGGCCACGTGTACCATTCAAATTGCATCACCCTCTGGTTGGAGCACTGCAACTCTTGCCCACTATGTCGCCGCCATATCACCTTTTTCTAA 384 0.526 MGSDNVNLTVSESTNNIVWMPLSVSTSNSSIDLEAFDLDEALGLAVVDGESRRPFMAWESFVSNLPTVNHVKRDDVCSVCMEGFTLRNTDEENKRVPCGHVYHSNCITLWLEHCNSCPLCRRHITFF 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02624 127 ProSiteProfiles Zinc finger RING-type profile. 77 121 IPR001841 -
Cca09g02624 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 29 124 - -
Cca09g02624 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 126 IPR013083 -
Cca09g02624 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 29 124 - -
Cca09g02624 127 Pfam Ring finger domain 76 121 IPR001841 -
Cca09g02624 127 SMART ring_2 77 120 IPR001841 -
Cca09g02624 127 SUPERFAMILY RING/U-box 70 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02624 Cca-Chr9 51869506 51870031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02624 33 124 C3H Transcription Factor Family AT5G01980 43.299 1.58e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02624 - K22378 gmx:102669154 190.274