Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02623 ATGGGTCGTCGAAAGATTGAAATTGCAACGGTGAAGGACCCTAACACAAGGCAAGTAACATTTTCTAAGCGTCGAACGGGTTTATTCAAAAAGGCGAATGAATTGTCCATCTTGTGCGGAGCAGAAATTGCTATTCTTGTGTTCTCCATTGGAAATAAGCCTTACTCTTTTGGCCACCCTAGTGTTGAAGCTGTTGTTGCCAAGTATCTTCCACATGCGACCCTTTCAAATGATGTCCAACAAAACAATCCATCTAATGAATTTGGTGACATAGATGGGTTAAATCAACAATTATCTAAAGTTCAGGCCCAAATACTTGATGAAGAAAAGAAGGGTGCAGAGCTTGATGAGATGCTAAAACAACTCCAAGTGACACAACTTTCTCAGTGTAAAGAATTGCAAGGTTCATTTTTAAAGCTCCAATGTAGGGTGAAGGATTACATTGACGCAATCCAAGTGTCAGAGTGCATGATGCTCCTTGCCCAAGGACCACAAATTGGAATAACAAATCAAGTGACTACAAAGAAAAGAAGAAATAGTTGA 543 0.3978 MGRRKIEIATVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAILVFSIGNKPYSFGHPSVEAVVAKYLPHATLSNDVQQNNPSNEFGDIDGLNQQLSKVQAQILDEEKKGAELDEMLKQLQVTQLSQCKELQGSFLKLQCRVKDYIDAIQVSECMMLLAQGPQIGITNQVTTKKRRNS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02623 180 PANTHER MADS BOX PROTEIN 2 172 - -
Cca09g02623 180 Coils Coil 91 111 - -
Cca09g02623 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g02623 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g02623 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g02623 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 172 - -
Cca09g02623 180 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Cca09g02623 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g02623 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g02623 180 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Cca09g02623 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Cca09g02623 180 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02623 Cca-Chr9 51863621 51864343 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02623 1 162 Type I MADS-box Gene Family AT2G34440 35.088 2.41e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca09g02623 SRF-TF 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02623 - - gmx:100791127 270.781