Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02614 ATGGGGAGAGCCATCAGGTGGTTGAAGGGGTTGTTTGGGATAAAGACAGAGAGAGAGCGCAGAGAGAATTCAAATTCTGGCACCAAATTGTGTCACTCAGACAGAGAATCCAGAGGTTTATGTCATAATCCAACCACCATTCCACCCAATATTTCACCGGCGGAGGCTGCTTGGCTACAATCCTTTTACTCACAAACTGAGAAGGAGCAGAACAAGCATGCCATCGCAGTTGCTGCAGCGACAGCAGCAGCTGCAGATGCTGCTGTCGCTGCAGCTCAAGCAGCCGTTGCAGTGGTTAGACTTACTAGCCACGGCAACAACAGGGAAACCGTGTTTGGTGGTGGACAAGAAAGGTTGGCTGTTGTTAAGATTCAAACTGTGTTTAGAGGATACTTGGCAAGGAAGGCATTGAGAGCCTTGAAAGGATTGGTGAAGTTACAAGCACTTGTGAGAGGGTACTTAGTGAGGAAGCAAGCAGCAGCAACCCTGCATAGTATGCAGGCTCTAATTAGAGCTCAAGCAACAGTGAGGTCTAAGAAATCTCGAGGACTCACTACAAAGAATGAAGCACATAGGTTTCAAACACAAGCACGAAGATCCATGGAGAGATTTGATGACATAAAGAGTGAGTACATAGGTCCCATCCACAGCAGAAGGATATCATCTTCCTTTGATGCCACAATGAACAATAGTGTTGATGGAAGCCCCAAAATAGTAGAAGTGGACACAGGGAGGCCAAAGTCAAGGTCTCGCAGGAGCAACACCTCAATGTCAGATTTTGGCGATGACCCTTCATTTCATGCACTTCCTTCTCCTCTCACATTCACTCATTTGTCCATACCAGACAGAAGGAATTTGCATGACTCGGAGTGGGGCCTAACGGGAGAAGAATGCAGGTTCTCCACGGCACAAAGCACTCCACGCTTCACAAACTCTTGCAGTTGTGGATCCCTTGTTGTTGCACCTATGACACCAAAAAGTGTTTGCACAGAAAACTTCTTCTATGGACAGTACCACAATTTTCCAAACTACATGGCCAGCACTCAGTCTTTCAAGGCCAAGTTGAGGTCTCATAGTGCTCCAAAGCAACGCCCTGATCCGGGTCCCAGGAAGAGGCTTTCCCTCAATGAGATGATGGAGTCTAGGAGTAGTTTGAGTGGTGCTAGAATGCAGAGGTCTTGCTCACAGATTCAGGAAGCTATTAATTTCAAGAATGCTGTGATGAGTAAGCTTCAGAAGTCCACGGAATTTGGTGTTGCAACAAGAAGAAGTAGTGATTGGTGA 1284 0.4681 MGRAIRWLKGLFGIKTERERRENSNSGTKLCHSDRESRGLCHNPTTIPPNISPAEAAWLQSFYSQTEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGNNRETVFGGGQERLAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQAAATLHSMQALIRAQATVRSKKSRGLTTKNEAHRFQTQARRSMERFDDIKSEYIGPIHSRRISSSFDATMNNSVDGSPKIVEVDTGRPKSRSRRSNTSMSDFGDDPSFHALPSPLTFTHLSIPDRRNLHDSEWGLTGEECRFSTAQSTPRFTNSCSCGSLVVAPMTPKSVCTENFFYGQYHNFPNYMASTQSFKAKLRSHSAPKQRPDPGPRKRLSLNEMMESRSSLSGARMQRSCSQIQEAINFKNAVMSKLQKSTEFGVATRRSSDW 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02614 427 Gene3D - 116 169 - -
Cca09g02614 427 ProSiteProfiles IQ motif profile. 141 168 IPR000048 GO:0005515
Cca09g02614 427 Pfam IQ calmodulin-binding motif 144 158 IPR000048 GO:0005515
Cca09g02614 427 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Cca09g02614 427 Pfam Protein of unknown function (DUF4005) 307 390 IPR025064 -
Cca09g02614 427 SMART iq_5 139 160 IPR000048 GO:0005515
Cca09g02614 427 SMART iq_5 116 138 IPR000048 GO:0005515
Cca09g02614 427 MobiDBLite consensus disorder prediction 359 373 - -
Cca09g02614 427 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 415 - -
Cca09g02614 427 MobiDBLite consensus disorder prediction 18 37 - -
Cca09g02614 427 MobiDBLite consensus disorder prediction 232 265 - -
Cca09g02614 427 MobiDBLite consensus disorder prediction 352 373 - -
Cca09g02614 427 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Cca09g02614 427 PANTHER IQ-DOMAIN 5-RELATED 1 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02614 Cca-Chr9 51743812 51746693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02614 1 390 IQD Protein Family AT3G16490 53.652 1.39e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02614 - - var:108346918 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02614 09 51743812 51746693 Cca09g02614 09 51743812 51746693 ECH