Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02613 ATGTCAAATTTTCATATCATTTTCTATGGTTTAGTTGTGGTAATTCTTCTTCTGCATAATCCAAGTGCAACACAATGCCACACCAAGGGAATTCGACCTAAGCCAGGGAATGGTTTATCTATCAACATGACCAGAGCTCAATTTTCAGAACAACAGTTCATGAAATGGGTGAGATTTGTGGGTGGCCTCAAACATTCTATCTTTAGGACAGCAAATAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCCCGGTAAAGGATACTTTACCTCAATTCAAGCTGCCATTGATTCCATTCCATTCATCAATATATTTAGAGTGGTAATTAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAGCATTCCTCCTTTCAAATCCTACATAACGATACAAGGAGCAGGAGCAGATAAGACTATCGTTCAATGGGGTGACACAGCTCAAAGCCAGCCACTAAGAACCTATGGTTCTGCAACTTTTGCTGTGAATGCTCCTTATTTCATAGCCAAGAACATCACATTCAAAAACACTGCCCCGGTTCCAGCACCAGGAGCAGTTGGAAAGCAAGCAGTGGCATTGAGAATTTCAGGAGACACAGCAATATTCCTAGGCTGCAAATTCTTAGGGGCACAGGACACACTCTATGATCAACTGGGTAGGCATTACTATAAGGATTGTTACATTGAAGGCTCTGTTGATTTCATATTTGGCAACGCTCTCTCTCTCTTTGAGGGATGTCACGTGCATGCCATAGCACAGCTTACAGGGGCCCTAACAGCACAAGGAAGGAGCAGTTTATTAGAAGACACGGGATTCTCGTTTGTTCACTGTAAGGTCACGGGTTCGGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGcgaccctaaccgtgaaatGACTGTGTTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTAACCGATGAGGAAGCTAAGCCATTTATTTCACTTAGCTATATTGATGGCTCTGAATGGATCAATCTTTCTATTTGA 1131 0.4279 MSNFHIIFYGLVVVILLLHNPSATQCHTKGIRPKPGNGLSINMTRAQFSEQQFMKWVRFVGGLKHSIFRTANNKLFPSHTLHVSKKPGKGYFTSIQAAIDSIPFINIFRVVIKVHAGVYTEKVSIPPFKSYITIQGAGADKTIVQWGDTAQSQPLRTYGSATFAVNAPYFIAKNITFKNTAPVPAPGAVGKQAVALRISGDTAIFLGCKFLGAQDTLYDQLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQLTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02613 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 375 - -
Cca09g02613 376 Pfam Pectinesterase 86 368 IPR000070 GO:0030599|GO:0042545
Cca09g02613 376 Gene3D - 78 375 IPR012334 -
Cca09g02613 376 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Cca09g02613 376 SUPERFAMILY Pectin lyase-like 77 374 IPR011050 -
Cca09g02613 376 PANTHER PECTINESTERASE 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02613 Cca-Chr9 51733868 51737016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02613 88 372 Carbohydrate Esterase AT5G47500 51.890 6.83e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02613 K01051 - gmx:100802832 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02613 09 51733868 51737016 Cca09g02613 09 51733868 51737016 ECH