Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02606 ATGTGGGAAGTTTATTTGGACAAGAGGCTGAGAAGCATTCGAATGATGGACATGGAGAAGCTCACAACTGTGGTCGTCCTCCTCTTGGTCCATTCCAATGCAGCAAAAGGGGCCATGAGTGTAGGTGTTGGCATTGGGCTTGGCAGTCCCCCAGCCCCCTCTGGATCCCCTGTGGCAAGCCTCACCAATGCCTACACTGCACTCCAGGCATGGAAATCTGCCATCACTGATGACCCTTTGAAGATCCTAGACACATGGGTTGGTCCCAATGTGTGTGGCTACAAGGGTGTCTTCTGTGCAGACTCTGAGGATGGCATTGCCACAACAGCAGCAACTGAGTCCTCACTTGTTGCAGCCATAGATCTCAACCATGCAAACCTCCAGGGGACCCTTGTCAAGGAActctctcttctctctcacatcactcttctcCACCTCAACTCCAACAGGCTCTCTGGCTCCCTCCCTGACACCTTCAGAGACCTCACCTCCCTCCAAGAGCTCGACCTCAGCAACAACCTCCTCTCAGGCCCTTTCCCCTCCGTCACCCTTTACATGCCAACCCTCATCTACTTGGACCTCAGGTTCAACAACTTCTCTGGGCCACTCCCTCAGGACCTCTTCAACAAGAAGCTTGATGCAATATTTCTCAACAACAACAACTTTGAAGGTGAAATCCCTCAGAGTTTGGGAAACTCACCTGCCTCAGTCATCAACCTTGCCAATAACAACCTCTCTGGGAACATCCCTTTTAGCTTTGCCTTCATGAGTTCTAGGCTAAAGGAGATTCTCTTCCTTAATAACCAACTAACAGGTTGCATTCCCCAAGGAGTAGGGATCTTCACTGAATTGCAAGTTTTTGATGTCAGCTTCAACTCACTCATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAACAAATTGAGGTTCTTAACTTGGCACATAACAAGCTCTCTGGGGAATTGTCAAATGTCGTCTGCTCCTTGAGAAGTTTGTTGAATCTAACCGTTGCTTACAATTTCTTCTCTGGGCTCAGTGGGGAATGTTCAAGGCTGTTCAATGTGGGATTTGATTTCTCGGATAACTGTATTCCTGGGAGGGATATGCAAAGACCACAACCAGACTGTTCTATTATCCCTGGTGGAAGTCTCAATTGTCTTAGAATTCCCACTCCGAATCCTCTTGTTTGTGCTGCTCTCGCTGAAAATTTGTCTAAGCACACAAACGCGCGCTCCTCTTCTCCCTGA 1248 0.4752 MWEVYLDKRLRSIRMMDMEKLTTVVVLLLVHSNAAKGAMSVGVGIGLGSPPAPSGSPVASLTNAYTALQAWKSAITDDPLKILDTWVGPNVCGYKGVFCADSEDGIATTAATESSLVAAIDLNHANLQGTLVKELSLLSHITLLHLNSNRLSGSLPDTFRDLTSLQELDLSNNLLSGPFPSVTLYMPTLIYLDLRFNNFSGPLPQDLFNKKLDAIFLNNNNFEGEIPQSLGNSPASVINLANNNLSGNIPFSFAFMSSRLKEILFLNNQLTGCIPQGVGIFTELQVFDVSFNSLMGHLPDTMSCLQQIEVLNLAHNKLSGELSNVVCSLRSLLNLTVAYNFFSGLSGECSRLFNVGFDFSDNCIPGRDMQRPQPDCSIIPGGSLNCLRIPTPNPLVCAALAENLSKHTNARSSSP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02606 415 PANTHER LRR/EXTENSIN 39 415 - -
Cca09g02606 415 PRINTS Leucine-rich repeat signature 165 178 - -
Cca09g02606 415 PRINTS Leucine-rich repeat signature 305 318 - -
Cca09g02606 415 Pfam Leucine rich repeat N-terminal domain 65 99 IPR013210 -
Cca09g02606 415 SUPERFAMILY L domain-like 64 352 - -
Cca09g02606 415 Gene3D Ribonuclease Inhibitor 235 352 IPR032675 -
Cca09g02606 415 Gene3D Ribonuclease Inhibitor 63 234 IPR032675 -
Cca09g02606 415 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 39 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02606 Cca-Chr9 51650652 51652404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02606 61 388 Leucine-rich Repeat extension Gene Families AT3G24480 47.605 5.44e-99 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02606 - - gmx:100786358 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02606 09 51650652 51652404 Cca09g02606 09 51650652 51652404 ECH