Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02604 ATGAATAAGATGAGCAACTTGAGTTGTGTTAGGAGCTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCTGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTCCCAGCGGGAGTGAAGTTTGATCCAACAGACCAAGAACTCATTGAACATCTTGAAGCCAAAGTTGAGGCAAAGAATATGAGATCACACCCTTTGATAGATGAGTTCATTCCCACCATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGCTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCATACACAACGGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGAGAAACCCGATGGCACAAGACAGGTAAGACCAGACCAGTCTTGGTTAACGGCAAGCAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGGAAGAACAGAAAACCAGAAAAGACCAACTGGGTGATGCACCAGTACCATCTGGGCCAGCACGAGGAAGAGAAAGAGGGAGAACTTGTGGTGTCAAAGATATTCTACCAAACGCAACCAAGGCAATGCAACTGGTCAGATAGAAGTGCCACAACTGGTGAAGGAAGTGGAGATCAACAACAACCTAACAGTGGAATAAGAGAGAGTGGAAGTGGAAGTTGTTCTTCTAAGGAAATTGTTACTCATAGAGATGAAATGTCTGCGGTTGTTGGGGTCCCTCCAATGACAACGTTCAACACTGCCTTGGATCTTCAACAACTCAACTCTGATCATTTTGGCTTCATCCCGTTCAGAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCGAGAGCAAGAGAAGTTCAAGCATCAGGATCATGCGATGAAGCACATGAACGACATGTAGCACATCATCATCAACAACAGCAGCATGCGCACCAACAAATTGCAACCACAGCCTTCCATATCAGTACACCTTCGCATCCCATCTCAACCATCATCTCTCCTCCACCCCTTCACCATGCATCCATAATCCTAGACGACAACTCTTACCATGTCTCCAGAATAATGCTCCAAAATGAAAATTTTCAGCAACAGCAGCAACAACATCATAAACTAGGAGGAAGGTCTGGCTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATATCAAAGAGGAGTCATCAATTACAAACCAACAAGAAGCTGAATGGTTGAAGTACTCTTCTTACTGGCCAGACCCTGGCAACCTGCAGGATCATCATCAGTAG 1332 0.4572 MNKMSNLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVLVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGDQQQPNSGIRESGSGSCSSKEIVTHRDEMSAVVGVPPMTTFNTALDLQQLNSDHFGFIPFRKSFDEVGIGEASRAREVQASGSCDEAHERHVAHHHQQQQHAHQQIATTAFHISTPSHPISTIISPPPLHHASIILDDNSYHVSRIMLQNENFQQQQQQHHKLGGRSGSGLEELIMGCTSTDIKEESSITNQQEAEWLKYSSYWPDPGNLQDHHQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02604 443 MobiDBLite consensus disorder prediction 216 250 - -
Cca09g02604 443 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Cca09g02604 443 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 423 - -
Cca09g02604 443 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Cca09g02604 443 MobiDBLite consensus disorder prediction 216 248 - -
Cca09g02604 443 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 423 IPR044799 GO:0003700
Cca09g02604 443 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Cca09g02604 443 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02604 Cca-Chr9 51626400 51632094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02604 4 432 NAC Transcription Factor Family AT5G56620 53.463 2.18e-139 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g02604 NAM 4.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02604 - - gmx:100794811 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02604 09 51626400 51632094 Cca09g02604 09 51626400 51632094 ECH