Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02596 ATGATGCTTGGGGAGACCCACCGCGCAAATCCAACCGTACACGTGCCACCGTGGCCGCTCCTCCACGAATCCACGCCGGAGATCTTTTCGCCCTACACTTTCCAAGAAGCGCTCAACGCGCTTCAGCACTACGACTCCACGGATGCTGAGTCAGACTCCGACCTTCCAACCAGGGAACCGGAAGTCCCGGTGGACGCATACTCATGCGATCATTTCCGCATGTTCGAGTTTAAGGTTCGGAGATGCGCGCGTGGCAGGTCGCACGACTGGACCGAGTGCCCCTACGCGCACCCCGGCGAGAAGGCGCGCCGCCGCGACCCCCGCAAGTACCACTACTCCGGCGCCGCCTGTCCCGATTTCCGAAAAGGGAGTTGCAAGAAGGGCGACGGCTGCGAGTACGCGCACGGGGTCTTCGAGTGCTGGCTCCACCCCGCCCGCTACCGGACTCAGCCCTGCAAGGACGGCACCTGTTGCCGCCGCCGCGTCTGCTTCTTCGCCCACACGCCCGAGCAGCTTCGGGTTCTGCCCCAGCAGAGCCCCCGCAGCGGCGACTCCTACGACGGGTCCCCTCTGCGACACGCGATGGAGTCCTCCTCCAAGGCGCTTCCTTTTCTGGAGTCCCCGCCCGTGGAGGCGAGCTCTCCGCCGATGTCGCCGTGTGTGAACGAGATGGTGGCCTCGCTGAGGAACCTGCAACTGGGAAAGGTTCCTGTCCGCGGCGGGGTGAACTTCTTTGAGGTTTGGGATCAGAGTTGCTCCGAGGAGCCCGTCATGGAGAGGGTGGAGTCTGGAAGAAGCTTAAGGGCCAGGATGTTTGAAAAATTGAGCAAAGAGAATTCCCTTGATGCCTCACCTTCACCCGATCTTGCCTGGGTTTCCGAGCTTGTCAGTCGTTGA 897 0.6232 MMLGETHRANPTVHVPPWPLLHESTPEIFSPYTFQEALNALQHYDSTDAESDSDLPTREPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGAACPDFRKGSCKKGDGCEYAHGVFECWLHPARYRTQPCKDGTCCRRRVCFFAHTPEQLRVLPQQSPRSGDSYDGSPLRHAMESSSKALPFLESPPVEASSPPMSPCVNEMVASLRNLQLGKVPVRGGVNFFEVWDQSCSEEPVMERVESGRSLRARMFEKLSKENSLDASPSPDLAWVSELVSR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02596 298 ProSiteProfiles Zinc finger C3H1-type profile. 112 138 IPR000571 GO:0046872
Cca09g02596 298 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 236 - -
Cca09g02596 298 PANTHER UNKEMPT FAMILY MEMBER 235 296 IPR045234 -
Cca09g02596 298 PANTHER UNKEMPT FAMILY MEMBER 7 236 IPR045234 -
Cca09g02596 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 136 IPR000571 GO:0046872
Cca09g02596 298 SMART c3hfinal6 111 137 IPR000571 GO:0046872
Cca09g02596 298 SMART c3hfinal6 146 169 IPR000571 GO:0046872
Cca09g02596 298 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 235 296 - -
Cca09g02596 298 Gene3D - 111 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02596 Cca-Chr9 51525857 51526843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02596 60 222 C2H2 Transcription Factor Family AT5G12850 57.396 7.11e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca09g02596 zf-CCCH 0.00021 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02596 - - gmx:100808676 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02596 09 51525857 51526843 Cca09g02596 09 51525857 51526843 ECH