Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02595 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAACGTCAAAAGAGGTCCTTGGTCTCCTCAAGAAGATGAAACTCTCAAAAATTACCTCATGAAACATGGGACTGCTGGTAACTGGATTACTCTACCACAAAAAGCAGGCCTTAAGCGCTGTGGAAAGAGTTGTCGTCTGAGATGGCTCAACTATCTCAGGCCTCATATCAAGCATGGAGGTTTCACTGATGAGGAAGACCAACTTATCTGCACCCTTTATGCCACCATCGGAAGCAGGTGGTCCCTTATAGCTGCACAATTACCTGGGAGAACAGACAATGATGTGAAAAACCATTGGAACACTAAGTTAAAGAAAAAGTTTTTGGCCGAAAACACCAATGCCACTGTTTGTCCACAGTTCTCAACTTCCACTCCTCAGCCTCAAGTTGAAGATCATGTTTTTGATCATAAGAACTCATCTGAGTCCCATGTTCTACGTTTTGAGCAAACACCAATTCCAAATCCTTCACCATTGCCTTTAGGATCAGATGTTTCAGGTCTTGGCAGCAGTTTTAGTGCACCACTACCCAATGAAGTTTCACTTCTTTCAAATTCAATTTCCTTGGTAAAAGAGGAGAATGAGACCCAATGGTTTGGCTACCATGACAACATTGAAGGTGAAGCATTTTTGCTTGATTTTGTGTATGAAGATCTGCTGCATAATGGGTTTGTTTCTCAAGATTGA 714 0.4216 MGRAPCCDKANVKRGPWSPQEDETLKNYLMKHGTAGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQLICTLYATIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAENTNATVCPQFSTSTPQPQVEDHVFDHKNSSESHVLRFEQTPIPNPSPLPLGSDVSGLGSSFSAPLPNEVSLLSNSISLVKEENETQWFGYHDNIEGEAFLLDFVYEDLLHNGFVSQD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02595 237 CDD SANT 71 113 IPR001005 -
Cca09g02595 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca09g02595 237 Gene3D - 70 141 - -
Cca09g02595 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Cca09g02595 237 PANTHER OS09G0431300 PROTEIN 1 156 - -
Cca09g02595 237 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca09g02595 237 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca09g02595 237 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca09g02595 237 CDD SANT 16 62 IPR001005 -
Cca09g02595 237 Gene3D - 7 68 - -
Cca09g02595 237 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cca09g02595 237 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca09g02595 237 SMART sant 13 64 IPR001005 -
Cca09g02595 237 SMART sant 67 115 IPR001005 -
Cca09g02595 237 PANTHER OS09G0431300 PROTEIN 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02595 Cca-Chr9 51516285 51517718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02595 1 134 MYB Transcription Factor Family AT5G57620 71.642 5.13e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g02595 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02595 K09422 - gmx:778160 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02595 09 51516285 51517718 Cca09g02595 09 51516285 51517718 ECH