Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02591 atggggacgaacgatgtgAGAGTGGACGTGAAGCTGAACAAGTTTGTGTGGAGCCAGGGGATCCGGAGTGTCCCAAGGAGAATTAGGGTTCGCGTTGCTCGCAAGAGGAACGATGACGAGGATGCGAAAGAGGAGCTATACTCCCTCGTTACAGTCGTCGAAATCCCCAAGGAGGAGATCAAAGGTTTGGGCACCAAGGTTATTGATGACGAGGATTGA 219 0.4749 MGTNDVRVDVKLNKFVWSQGIRSVPRRIRVRVARKRNDDEDAKEELYSLVTVVEIPKEEIKGLGTKVIDDED 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02591 72 Gene3D - 1 72 IPR023621 -
Cca09g02591 72 Pfam Ribosomal protein L31e 1 44 IPR000054 GO:0003735|GO:0005840|GO:0006412
Cca09g02591 72 ProSitePatterns Ribosomal protein L31e signature. 6 20 IPR020052 GO:0003735|GO:0005840|GO:0006412
Cca09g02591 72 PANTHER 60S RIBOSOMAL PROTEIN L31 1 72 IPR000054 GO:0003735|GO:0005840|GO:0006412
Cca09g02591 72 SUPERFAMILY Ribosomal protein L31e 1 44 IPR023621 -
Cca09g02591 72 SMART Ribosomal_L31e_2 1 45 IPR000054 GO:0003735|GO:0005840|GO:0006412
Cca09g02591 72 PANTHER 60S RIBOSOMAL PROTEIN L31-2-RELATED 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02591 Cca-Chr9 51491558 51491776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02591 1 72 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 77.778 2.02e-36 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02591 K02910 - gmx:100305583 128.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02591 09 51491558 51491776 Cca09g02591 09 51491558 51491776 ECH