Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02578 ATGAGCAGCCAAAAGGATCGTCATGAAGAAGAGATGGGTACCTCAGAAACCACCGGTAAAGTGATTGTGGTCGCAGTGAAAGCTTCTAGAGATATTTCAAGGACTGCTTTGGTGTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGCTGTTGGTTCTCATTCCGGCTCTTTCCTCAAGCAAGAGGGTATGGGGACTTTCAAGATTTACTACTGATTGTGCCTCTAGTAATTGGAGATCTAGTTTAGGAACTGCTTCAGATCAGAAAGAAGTTATTACAAATTCCTGTTCTCAGTTAGTGCTTCAACTCCATGATTTTTATGATCCAGAGAAGATAAAAATCAGAGTGAAGATTCTTTCTGGTTCTTTATGCGGAGCTGTGGCGGCTGAAGCTAAGAGAGTCCAGTCAAGCTGGGTTATATTGGACAAAAAATTGAAACATGAAAAGAAATACTGCATGGAGCAGCTGCATTGCAATATTGTAATTATGAAGCGGTCTCGGCCAAAGATTCTGCGCTTGAATTTGAACAGTTCACCTAAGATGGAACTAAACATGGCTTGTCCATTGACATTTACAAGAAACTTCAAAGAAAAATCAGAACAACGTCAAGATATAATTAGAGGTCCAGCTGTTACTCCTGCTAGTAGTCCTGAACAAGGGTCACCACCATTGACTGCAACTGATATTGGAACATCATCCATATCAAGCTCAGATCCTGCAACTTCCCCATTTTTCCACTCGGACATTTATGAAAGACAAAGGAGAGGTTTTGCTTTTGTTCATGAGGGATTGACTAATCTGGAGGAAATTGAGTCTGACTCAGAGAGCGAAAAGCTAAGTATGTCATCCAAGAGTTCATATTTTCAGCCATGGATTGCAAATGTAATTTGCATGGATGGTGATTTCTCAAAACACGAGGACAACATGCAGAGATCCAATGACAAGACTTTGGTTTCAGCCTATGAAGCTTTGCTTCAGAAATTCTCAAAGTTGGATCAAGATCCTATCGTAGGAGTGCTCAACTGTAAAATTGATGTGAACTTGAGCAAAAGTGTTAGAGAAGCAATTTCACTAGCTAAGAGTTCACCTCCTGGTCCTCCCCCATTGTGTTCAATTTGTCAGCACAAGGCACCTGTGTTTGGCAATCCTCCAAGGTGGTTCACATTTGCTGAATTGCAACTTGCCACAGGTGGTTTTTCACAAGTAAACTTTTTGGCTGAAGGTGGTTTTGGTTCTGTACACCGTGGTGTCCTACCTGATGGCCAAGTCATTGCTGTCAAGCAGTATAAATTAGCCAGTACTCAAGGAGATAAAGAGTTTTGCTCAGAAGTAGAGATCTTAAGCTGTGCACAACATCGAAATGTTGTTATGTTAATTGGGTTCTGTGTGGAGGATGGAAGAAGATTACTAGTTTATGAATATATTTGCAATGGCTCTCTGGATTCTCATCTCTACAGACGAAAGCAGAATGTGTTGGAATGGTCTGCACGGCAAAAAATTGCAGTAGGGGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGCATTGTGCACCGTGACATGCGGCCTAACAATATCCTCCTCACTCATGATTTTGAAGCTTTAGTGGGAGATTTTGGACTTGCTAGATGGCAGCCAGATGGAGACATGGGAGTGGAAACAAGGGTGATAGGAACATTTGGGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGACGTGTACTCGTTTGGGATAGTACTACTGGAACTTGTCACAGGACGGAAAGCTGTGGATATAAACCGGCCCAAGGGCCAGCAATGTCTAAGTGAATGGGCACGCCCATTGCTTGAGAAACAAGCCATTTATAAATTAATAGATCCGAGCTTAAGGAACAGCTATGTTGATCAAGAGGTTTATCGCATGCTGCAATGTTCCTCTTTGTGCATTGGACGAGATCCTCATTTAAGGCCTCGAATGTCTCAGGTGCTGAGGATACTGGAAGGTGACATTCTAATGTGA 2037 0.4232 MSSQKDRHEEEMGTSETTGKVIVVAVKASRDISRTALVWALTHVVQPGDCIKLLVLIPALSSSKRVWGLSRFTTDCASSNWRSSLGTASDQKEVITNSCSQLVLQLHDFYDPEKIKIRVKILSGSLCGAVAAEAKRVQSSWVILDKKLKHEKKYCMEQLHCNIVIMKRSRPKILRLNLNSSPKMELNMACPLTFTRNFKEKSEQRQDIIRGPAVTPASSPEQGSPPLTATDIGTSSISSSDPATSPFFHSDIYERQRRGFAFVHEGLTNLEEIESDSESEKLSMSSKSSYFQPWIANVICMDGDFSKHEDNMQRSNDKTLVSAYEALLQKFSKLDQDPIVGVLNCKIDVNLSKSVREAISLAKSSPPGPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQVNFLAEGGFGSVHRGVLPDGQVIAVKQYKLASTQGDKEFCSEVEILSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYRRKQNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDINRPKGQQCLSEWARPLLEKQAIYKLIDPSLRNSYVDQEVYRMLQCSSLCIGRDPHLRPRMSQVLRILEGDILM 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02578 678 MobiDBLite consensus disorder prediction 211 243 - -
Cca09g02578 678 Gene3D Transferase(Phosphotransferase) domain 1 478 676 - -
Cca09g02578 678 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 17 678 - -
Cca09g02578 678 PANTHER OS01G0253100 PROTEIN 17 678 IPR045271 GO:0004714|GO:0006468
Cca09g02578 678 Pfam Protein tyrosine and serine/threonine kinase 406 671 IPR001245 GO:0004672|GO:0006468
Cca09g02578 678 SUPERFAMILY Protein kinase-like (PK-like) 382 672 IPR011009 -
Cca09g02578 678 ProSitePatterns Tyrosine protein kinases specific active-site signature. 523 535 IPR008266 GO:0004672|GO:0006468
Cca09g02578 678 ProSiteProfiles Protein kinase domain profile. 402 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02578 678 Gene3D Phosphorylase Kinase; domain 1 374 477 - -
Cca09g02578 678 MobiDBLite consensus disorder prediction 217 243 - -
Cca09g02578 678 CDD STKc_IRAK 408 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02578 Cca-Chr9 51361407 51365848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02578 361 668 Trihelix Transcription Factor Family AT1G68690 50.321 4.52e-100 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Cca09g02578 PK_Tyr_Ser-Thr 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02578 - - gmx:100305413 1266.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02578 09 51361407 51365848 Cca09g02578 09 51361407 51365848 ECH