Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02577 ATGGGGAGGAAGTGCTCACATTGTGGAACCATAGGGCACAATTCAAGGACTTGCACATCTTTGAGAGGCAGCACTAGCACTAGTTTCGTAGGACTTCGCCTCTTTGGCGTGCAATTAGACACGTGTGTTGCCATCAAGAAAAGCTTTAGCATGGATTCCTTACCCTCTTCCTCATTCTCTTCATCAAGAATAACAACCATTGATGATAGCTCTGACCGAACCTCTTTTGGCTATCTATCAGATGGCCTCTTAGGTCGACCCCAAGAGAGGAAAAAAGGAGTGCCATGGACAGAAGAGGAACACCGAATATTCCTTATTGGACTTGAGAAGCTTGGAAAGGGTGACTGGAGGGGAATCTCTAGAAACTTTGTGACAACAAGAACCCCAACACAAGTTGCAAGCCACGCTCAGAAGTACTTTCTTCGACTCGCAACTTTAAATAAGAAGAAGCGACGTTCAAGTCTCTTTGACTTGGTTGGTAGCAACAACGCCAACGTGGGTAGTTCAAATTCAGTTTCGGCTCATCAAAATAATGATGAGTCTAAATGTGAAGTTAAAAATAGTGATGCCACTTTGTCGTTGCTAGGGCGTATAACCTGCTCTGAGCAAGAAACCAAATCAGAAGAAAAATTTGACAATTGCACTCATAAAATTGAAGCAGATGCAGAACTTGAAGATGTTCCTAATCTGGAGCTCACTCTTGCAGCCCCCAAAGAAAGGAGCCTGCAGGAACAAAACAAATCATCCCCTTCTGCTTCATTCTTGCTTGGGCCAATTAGCGTCACTTAA 789 0.4385 MGRKCSHCGTIGHNSRTCTSLRGSTSTSFVGLRLFGVQLDTCVAIKKSFSMDSLPSSSFSSSRITTIDDSSDRTSFGYLSDGLLGRPQERKKGVPWTEEEHRIFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATLNKKKRRSSLFDLVGSNNANVGSSNSVSAHQNNDESKCEVKNSDATLSLLGRITCSEQETKSEEKFDNCTHKIEADAELEDVPNLELTLAAPKERSLQEQNKSSPSASFLLGPISVT 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02577 262 MobiDBLite consensus disorder prediction 238 262 - -
Cca09g02577 262 SMART sant 92 142 IPR001005 -
Cca09g02577 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 144 IPR017930 -
Cca09g02577 262 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 252 - -
Cca09g02577 262 Pfam Myb-like DNA-binding domain 95 140 IPR001005 -
Cca09g02577 262 CDD SANT 95 140 IPR001005 -
Cca09g02577 262 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
Cca09g02577 262 ProSiteProfiles SANT domain profile. 96 144 IPR017884 -
Cca09g02577 262 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 91 142 IPR006447 GO:0003677
Cca09g02577 262 MobiDBLite consensus disorder prediction 239 262 - -
Cca09g02577 262 MobiDBLite consensus disorder prediction 166 185 - -
Cca09g02577 262 Gene3D - 94 146 - -
Cca09g02577 262 ProSiteProfiles Myb-like domain profile. 88 140 IPR001005 -
Cca09g02577 262 PANTHER TRANSCRIPTION FACTOR KUA1 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02577 Cca-Chr9 51348422 51350063 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca09g02577 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02577 - - gmx:778052 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02577 09 51348422 51350063 Cca09g02577 09 51348422 51350063 ECH