Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02573 ATGGGGAGGAGGATACTGAATGATGCGTTGAGGAGTATGGTGAATGCTGAGAGGAGAGGGAAAGCTACGGTGGATCTCAAGCCAATCTCCACTCTCATGTCTTCCTTTCTCCGCATCATGAAACACCATGGTTATATCAGGGACTTTCAAGTCTATGATCCGCATAGAGTGGGGAGGATCACGGTTGAACTGCAAGGTAGGATTAATGATTGCAAGGCCCTTACTTTCCGAAAAGACCTCAAGGCAAGGGATATTGAAGCCTACAGATTAAAGACTCTTCCAACGCATCAGTGGGGTTATGTTGTGATTACAACTCCTGATGGTATTTTGGATCATGAAGAGGCGATTAAAAAGAATGTAGGTGGCCAGGTTCTTGGTTTCTTTCACTAG 390 0.4513 MGRRILNDALRSMVNAERRGKATVDLKPISTLMSSFLRIMKHHGYIRDFQVYDPHRVGRITVELQGRINDCKALTFRKDLKARDIEAYRLKTLPTHQWGYVVITTPDGILDHEEAIKKNVGGQVLGFFH 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02573 129 ProSitePatterns Ribosomal protein S8 signature. 99 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca09g02573 129 Gene3D - 69 129 - -
Cca09g02573 129 SUPERFAMILY Ribosomal protein S8 3 128 IPR035987 GO:0003735|GO:0005840|GO:0006412
Cca09g02573 129 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 129 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca09g02573 129 PANTHER 40S RIBOSOMAL PROTEIN S15A-2 1 129 - -
Cca09g02573 129 Pfam Ribosomal protein S8 6 127 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca09g02573 129 Gene3D - 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02573 Cca-Chr9 51320189 51321097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02573 1 129 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 81.395 1.29e-80 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02573 K02957 - gmx:100792186 246.514