Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02562 ATGGCTTTAACCCTACCAACCCACTCTTCTCCCACCGTTATTCCTCTCCGGCGAACCCCAAAACCCACCCTCCGCCGCGCCAACCACCGCGTTTGCGTCGCCAGCGGCGGCGCTCCCCTCCTCCAAGTCAATGACCTGAGGGCCAAAATCGTGGAATCCAACGTCGAGATTCTCCACGGCGTTAACCTCACCGTCAACCAAGGAGAGGTCCACGCCATCATGGGAAAAAACGGTTCTGGCAAAAGCACTTTCGCCAAGGTTCTTGTGGGGCATCCGGATTATGAAGTAACTGGGGGTAGTGTTGTGTTCAAAGGTGAGAATTTGCTTGAGATGGAACCTGAAGAAAGGTCTCTTGCGGGTCTCTTCATGAGTTTCCAATCCCCTGTTGAAATCCCCGGTGTTTCCAATGATGAGTTTCTCGTCATGGCCTACAATGCCCGCAGAAAAAAGCTTGGTCTACCTGAGCTTGGACCGCTCGAGTGTTTTTCTTACCTGATGGAGAAACTTGAGCTAGTTAACATGAAGCCCGACTTTCTCAATAGGAATGTGAACGAAGGGTTTAGTGGCGGTGAACGCAAGCGCAATGAAATCTTGCAGCTCGCAGTTTTGGGGGCAGACTTGGCTATTTTGGATGAAATTGATTCTGGGTTGGATGTTGATGCACTCAGAGATGTTTCCAATGCAGTTAACCGGATTCTCACCCCAGAGAAATCTTTGTTGATGATAACTCATTATCGACGGATTCTGGATCTTTTGAATCCCACGCATGTCCATGTCATGGACAAAGGGAAAATTGCAAGAACAGGCGACATATCAATGGTAGAAGCTATTGAGGCAGACGGATATGAAACAGTCTCTACTTAA 864 0.4896 MALTLPTHSSPTVIPLRRTPKPTLRRANHRVCVASGGAPLLQVNDLRAKIVESNVEILHGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSNDEFLVMAYNARRKKLGLPELGPLECFSYLMEKLELVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVSNAVNRILTPEKSLLMITHYRRILDLLNPTHVHVMDKGKIARTGDISMVEAIEADGYETVST 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02562 287 CDD ABC_FeS_Assembly 41 282 IPR010230 GO:0005524
Cca09g02562 287 Gene3D - 40 286 IPR027417 -
Cca09g02562 287 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 37 286 IPR010230 GO:0005524
Cca09g02562 287 TIGRFAM sufC: FeS assembly ATPase SufC 41 284 IPR010230 GO:0005524
Cca09g02562 287 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524
Cca09g02562 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 272 IPR027417 -
Cca09g02562 287 Pfam ABC transporter 58 212 IPR003439 GO:0005524
Cca09g02562 287 SMART AAA_5 67 264 IPR003593 -
Cca09g02562 287 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 287 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02562 Cca-Chr9 51186058 51191635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02562 54 281 Calmodulin-binding Proteins AT2G36910 23.651 3.66e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02562 K09013 - gmx:100798005 507.679