Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02561 ATGGAAGGCTATGAGAAGCGCACGGCGCAGAGGCATAACGGTGGAAATGGAGTGATAGTCCCGTCGTATAGTTCTTCGCGCCAGGAATTTGGCGCGCATGCTGCTGCGAGAAACGCTTATTCAACTTCAAGATACGATATGGCTGTGACGAGGAATGTTAAGAAAAAGCAAAAGCGTAAATGTCTTCAGGAGCTGCTTACAACTGATTATATTGTGAACAACGTGTTGCGGAAGGGTGGTCCTCCACTTGGTCAGGAATTTGATTTCCCTCCTGGACCCAAATATTTCACTTCTGCTTGTCAAGAGGACCAAGGTTCCACCAAAAAGAGGAAGGTTTCCAAGAGTGCAATTCAAAGTCCTGTGGATTGTAACACAAAAGCACCTGTGAGGAAACACGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATTCCAGAgaccttcccattggttttggcattgctggccaagaagttcctctaATATCTAATTCTACAAGACAGAAACCAGTCCATGGGAACAACAGGTCATGCAATACAGTAAACATGAACGGAATGCCAAAAAATAAAATGCAGAGCAAGAGAAATAAATCGCAGGATAAGAGGAAACTTTCCATGCAAAGAAGAGTGGGGGAATTGAACCTATATGTGACTCTGAATCAGCCACCAAAGGAAAAATGTGAACTAGCTTTGGATAATGCCTTATCCGAGGATGGAGTTGATCGAGTTTCAATGTTAATTGATGATGAAGAGTTAGAGCTGAGGGAGTTGCAAGAAGGAACCGATCTGTTTATGTGTTCTGATCATCTTGCTTCCAGTGGAATGCTTGGCCGTTCACTTTGTACAGATGTGCTAGTGAAGTTTCCCCCAGACACTGTCAAGATGAAGAAACCTATCCGTTTGCAACCTTGGGACTCGTCTCCAGAAATTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCGATGATTGTTGATATTTGTCCCTTCACTCTTGATGAGTTTGTTCAAGCATTTCATGATAAGGTTGAAAATCAAGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAATACTCCGTCAGGTGCTGGTTGCTTCTGGATTTGGTTCAAAACAAGGTTCCTTACGTAGAGAGGTCCTTAGCAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACTTTGAAGTGTGAGCTGTTTAACATCTTGTCTGAGAGAGGGAACATTGGATGCAAAGTATCTGAACTGGCAAAGTCAACGCAGATTGCTGGATTAAACCTTGCCGGCACAAATGAGGAACTTGAGTCTTTGATATATTCCACGCTTTCAAGTGATATTTCTTTATTTGAAAAGATTTCATCAACTGCATACCGATTGCGTATGAGCAATGTTATGAAGGACAGTGATGAATCTCATTCAGATACGGAGGACTCTGGTAGTGTTGATGATGAACTTAATAACATTGATACGTGTAGCAGTGGTGATGATTTTGAAAGTGATTCCATAAACTCCAGTATAAGAAAATTGAAGCGTGCAAGCAGTCATAAAATTAAAAATAATATGCTGCAAGTGTACACTGAAATTGATGAGAGCCATCCTGGAGAAACATGGTTATTAGGACTGATGGAGAGTGAATATTCAGACTTGAACATTGAAGAAAAATTGAATGCGTTGGCATCTTTAACCGATCTTCTTTCATCTGGATCCAGCATCAAGATGAAGGATTCAACAAAAGTAACAGCTGATTGCAATTCTAGCATCCCATTACGTGGTTCTGGAGCTAAAATAAAGAGATCAGTAGTAAAGAAACCTGGGCCATTTTGGAACCAGAAAGTACACATAAATTCTGATCCCTGTCCAGTAGATTCCTCATCATTAATCTCAAGATTCACTTCCTTTGAAAAGGCACAAAGTTCATCTATTTTGCACCCTATTCAATCAGTGTTTCTGGGATCTGATCGTCGGTTCAATAGATACTGGCTTTTCTTGGGCCCTTGTAATATAGATGACCCAGGCCACAGGAGGATTTACTTTGAATCATCTGAAGATGGTCACTGGGAGGTTATTGATACTGAGGAGGCCTTGTGTACCTTGTTGTCAGTTCTGGATGATAGAGGAAAACGGGAGGCCCTTCTTATTGAATCTTTGGAAAGAAGACAAACTTCTCTATGCAGATCTATGTCCAGGATTAATGTTAATAGTTCTGGAATGGGTTCCATGTCACATTCTGATCAATCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCTGCATCTGATGTAGACAATCTGAACCTGACTGAGATTGGTAAAGACTCTTTGCCATCAGTTGGAGCTGTGGTAATTGAAGCTGGAAAGAGAAGAGAGGAACAAATTCAAAAATGGATCCGTGTTCAAGAATATGATTCTTGGATCTGGGATTCCTTTTACTTGCAACTCAATGTTGTAAAATATGGTAAAAGGTCTTATCTGGACTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGGCACTGTAAAATTTGTCATATGACATTTGAGCTTGATTTTGACCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGGGAGAAAGAAGACAGCAATACATTTCCTAATCATAAAGTGCTAGCATCACATATTCAATCACTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTAGTTGGTGCTTGGAGGAAGTCTGCTCATAAACTATGGGTGAAACGGCTCAGACGCACCTCAACTTTAGTGGAGCTTTTGCAGGTTCTTGCCGATTTTGTTGGTGCCATCAATAAGGACTGGCTGTTTCAATGCAAATTTCCGGATGGTGTGGTTGAAGAAATCATTTCATCTTTTGCATCTATGCCCCATACATCATCTGCCCTTGCTCTGTGGTTAGTAAAGTTAGATGCCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCAGAAGAAGCAGGGAATCAGTCAACACGATCCTTGGCGATAG 3075 0.4039 MEGYEKRTAQRHNGGNGVIVPSYSSSRQEFGAHAAARNAYSTSRYDMAVTRNVKKKQKRKCLQELLTTDYIVNNVLRKGGPPLGQEFDFPPGPKYFTSACQEDQGSTKKRKVSKSAIQSPVDCNTKAPVRKHGIGKGLMTVWRATNPDSRDLPIGFGIAGQEVPLISNSTRQKPVHGNNRSCNTVNMNGMPKNKMQSKRNKSQDKRKLSMQRRVGELNLYVTLNQPPKEKCELALDNALSEDGVDRVSMLIDDEELELRELQEGTDLFMCSDHLASSGMLGRSLCTDVLVKFPPDTVKMKKPIRLQPWDSSPEIVKKLFKVFHFIYTYAMIVDICPFTLDEFVQAFHDKVENQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRREVLSKELNLLVNYGLCPGTLKCELFNILSERGNIGCKVSELAKSTQIAGLNLAGTNEELESLIYSTLSSDISLFEKISSTAYRLRMSNVMKDSDESHSDTEDSGSVDDELNNIDTCSSGDDFESDSINSSIRKLKRASSHKIKNNMLQVYTEIDESHPGETWLLGLMESEYSDLNIEEKLNALASLTDLLSSGSSIKMKDSTKVTADCNSSIPLRGSGAKIKRSVVKKPGPFWNQKVHINSDPCPVDSSSLISRFTSFEKAQSSSILHPIQSVFLGSDRRFNRYWLFLGPCNIDDPGHRRIYFESSEDGHWEVIDTEEALCTLLSVLDDRGKREALLIESLERRQTSLCRSMSRINVNSSGMGSMSHSDQSELDMVTDDSYSPASDVDNLNLTEIGKDSLPSVGAVVIEAGKRREEQIQKWIRVQEYDSWIWDSFYLQLNVVKYGKRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKEDSNTFPNHKVLASHIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLADFVGAINKDWLFQCKFPDGVVEEIISSFASMPHTSSALALWLVKLDAIIAPYLDRVHPQKKQGISQHDPWR 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02561 1024 MobiDBLite consensus disorder prediction 481 495 - -
Cca09g02561 1024 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 662 735 IPR028941 -
Cca09g02561 1024 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 548 588 IPR028942 -
Cca09g02561 1024 MobiDBLite consensus disorder prediction 169 207 - -
Cca09g02561 1024 MobiDBLite consensus disorder prediction 169 196 - -
Cca09g02561 1024 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 30 349 IPR044977 GO:0006357
Cca09g02561 1024 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 350 1015 IPR044977 GO:0006357
Cca09g02561 1024 PANTHER OS07G0619600 PROTEIN 30 349 - -
Cca09g02561 1024 PANTHER OS07G0619600 PROTEIN 350 1015 - -
Cca09g02561 1024 MobiDBLite consensus disorder prediction 481 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02561 Cca-Chr9 51174780 51184248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02561 232 485 Homeobox Transcription Factor Family AT1G28420 27.139 1.64e-28 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02561 - - gmx:100792062 1715.28