Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02557 ATGGCACTAAGTGGTTGGCATTGTTGGATCATATTCTTTTTCATTCTTTTAACCAATAGCAACATTCTTCCTTCTTCTGCGGCTTCTGATTCTGAATTGCTCCTCAAGGTCAAGGAAAACTTAGAAAACAACGCTGGCTTATCATCATGGAACACGTCCAATCCTCCATGCACCAATGGCCATGCAAATTGGCGTGGCATTCTTTGCTACCAAGGAAAAGTGTGGGGCGTGAAGCTTGAGAACATGGGGCTCAAAGGGGTCATTGATGTTGAGTCCCTCAAGGCCTTGCCTTATCTTAGAACCTTGAGTTTCATGAACAATGATCTTGAGGGTCCATGGCCAGAGATTCACCGCCTTATTGGTCTAAAGTCTATTTATCTTTCCAACAACAAGTTCTCTGGGGAGATTCCTTTCCAAACCTTTCAGGGTTTGCAGTGGCTCAAGAAAATCCATTTGTCAAACAACCAGTTCACGGGTGAAGTTCCAATCTCGGTGGCTTCGTTGCCGAGGCTCTTGGAGTTGAGGTTGGATGGAAACCAATTCACTGGCGCCATTCCTCGTTTTCACAGACACAGGTTAAGATCATTCAGCGTCGCTAATAATCAGTTGCATGGCCAAATTCCTCCTTCCCTTAGTAAATTTCCGGTTTCTTCTTTTTCTGGTAATGAAAGGTTATGTGGAACCCCTTTGGAAGCATGCAAGGCCAAGACATCCACAGTGAGCATCATTGTGGCTGTGGTAGTTGTTTGCGTGGCAGTGATTGTGATTGGAGCAGTCATATTCATCCTCCACAGAAGAAGACAAAGATCAGCAGCATGCATCGAGAATTCTGAAAGTGGTCTCAGCAAGGGAAGAGCCAGGGACATTAGTAATGAAAGCAGAAGGTCATCGTCCATTAGCTCCAACCGCAGCAGAAGAGGAGGGGAACACATGAGGCTCTCTTTTCTGCATGATGACAGAGAGAGGTTTGATTTGCAAGAGTTGCTGAGAGCCTCTGCTGAGATATTGGGCAGTGGCTGCTTCAGCTCTTCCTACAAGGCTTCTCTGCTGGATGGGCCAACCATAGTGGTGAAGAGGTTCAAGCAGATGAACAATGTTGGAAAGGAAGAGTTTCAAGAGCACATGAGGAGGATTGGGAGGTTGAGTCATCCTAACTTGCTTCCTCCTGTGGCTTACTATTATAGGAAGGAGGAGAAGCTCATGGTCACTGACTTTGTTCAGAATGGAAGTTTGGCTGTTCGACTTCATGGACACCAATCCCTGGGAGAACCTAGCCTTGATTGGCCAATCCGGTTGAAGATTGTGAAAGGCATAGCAAAGGGTCTTGAATATCTATACAGGGACATGCCAAGACTAATAGCACCCCATGGAAACCTTAAGTCCTCCAATGTCCTCTTGACAGAGTCTTTTGAGCCTCTCCTCACAGACTATGGCCTAGTCCCAGTGATCAACCAAGAACTGGCTCAAGACATCATGGTCATATACAAGTCTCCTGAGTACTTGCAACAAGGAAGAATCACAAAGAAGACTGATGTGTGGTGTCTTGGAATACTAATTCTTGAGATCCTAACTGGGAAATTCCCTGCCAACTTTTTGCAACAAGGGAAGGGTAGTGAGGTGAGTTTGGCAAGTTGGGTGCATTCAGTGGTCCCAGAAGAGTGGACCAATGCAGTGTTTGATCAAGAGATGGGGGCAACACAGAACTGTGAGGGAGAGATGGGGAAGCTTTTGAAGATTGCTTTGTGTTGTTGTGAAGGGGATGTGGACAAGAGATGGGATTTGAAGGAAGCAGTAGAGAAAATCCAGGAGGTGAAGCAGAGAGATCATGATCAAGAAAATTTTTATACTTCTTATGCTAGTGAAGCAGACCTGAAGTCTTCGACTTGA 1887 0.4568 MALSGWHCWIIFFFILLTNSNILPSSAASDSELLLKVKENLENNAGLSSWNTSNPPCTNGHANWRGILCYQGKVWGVKLENMGLKGVIDVESLKALPYLRTLSFMNNDLEGPWPEIHRLIGLKSIYLSNNKFSGEIPFQTFQGLQWLKKIHLSNNQFTGEVPISVASLPRLLELRLDGNQFTGAIPRFHRHRLRSFSVANNQLHGQIPPSLSKFPVSSFSGNERLCGTPLEACKAKTSTVSIIVAVVVVCVAVIVIGAVIFILHRRRQRSAACIENSESGLSKGRARDISNESRRSSSISSNRSRRGGEHMRLSFLHDDRERFDLQELLRASAEILGSGCFSSSYKASLLDGPTIVVKRFKQMNNVGKEEFQEHMRRIGRLSHPNLLPPVAYYYRKEEKLMVTDFVQNGSLAVRLHGHQSLGEPSLDWPIRLKIVKGIAKGLEYLYRDMPRLIAPHGNLKSSNVLLTESFEPLLTDYGLVPVINQELAQDIMVIYKSPEYLQQGRITKKTDVWCLGILILEILTGKFPANFLQQGKGSEVSLASWVHSVVPEEWTNAVFDQEMGATQNCEGEMGKLLKIALCCCEGDVDKRWDLKEAVEKIQEVKQRDHDQENFYTSYASEADLKSST 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02557 628 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Cca09g02557 628 ProSiteProfiles Protein kinase domain profile. 330 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02557 628 PANTHER LRR RECEPTOR-LIKE KINASE 8 618 - -
Cca09g02557 628 Pfam Leucine rich repeat N-terminal domain 28 69 IPR013210 -
Cca09g02557 628 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 618 - -
Cca09g02557 628 Gene3D Phosphorylase Kinase; domain 1 295 405 - -
Cca09g02557 628 Gene3D Ribonuclease Inhibitor 192 233 IPR032675 -
Cca09g02557 628 Pfam Protein tyrosine and serine/threonine kinase 334 600 IPR001245 GO:0004672|GO:0006468
Cca09g02557 628 SUPERFAMILY L domain-like 54 215 - -
Cca09g02557 628 MobiDBLite consensus disorder prediction 283 306 - -
Cca09g02557 628 Gene3D Ribonuclease Inhibitor 27 190 IPR032675 -
Cca09g02557 628 SUPERFAMILY Protein kinase-like (PK-like) 334 607 IPR011009 -
Cca09g02557 628 Gene3D Transferase(Phosphotransferase) domain 1 406 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02557 Cca-Chr9 51136492 51140420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02557 8 627 Receptor kinase-like Gene Family AT5G35390 54.000 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca09g02557 PK_Tyr_Ser-Thr 2.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02557 - - gmx:100804368 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02557 09 51136492 51140420 Cca08g00013 08 408905 412014 PCT