Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02554 ATGGGGATGTGCTTCAGCATTGAAGATGAAAAGCGCCTTTCCGTCTCCGATACGAGCGCCAAGCCTAAACCTGCTGGATCTGCAGATCGTGAATCTGGCGCTCCATTGGTGTCGAGTTCGATGAACATCAAAGATCTCCGCAAAAGCGCTGGACACTGCAATGTGGATATTTTCACGTACGAGGAGCTGAGGCTCGCGACGAAGCACTTTCGTCCCGATTTCATTTTAGGAGAGGGAGGATTTGGAGTTGTATATAAAGGAGTCATAGACGATAGCGTAAGGTCAGGTTACAAGACCATCGAGGTCGCCATTAAGGAGCTTAATCGCGAAGGATTTCAGGGCGATAGGGAATGGCTCgcggaagttagctatttaggtcaattcagtcaccccaatctggtgaagctcattggatattgctgtgaggacgagcaccggttgttggtctatgaatacatggcaagtgggagcttggagaagcatctttTTCGCAGAGTGGGCTCAACGTTGACTTGGTCCAAACGAATGAAAATTGCTTTACATGCTGCAAGAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCTATCATATATCGTGACTTCAAGACTTCAAATATCTTAATAGATGCGGATTTCAATGCGAAGCTTTCAGATTTTGGCCTTGCAAAGGATGGGCCGATGGGGGACCAAACCCATGTCTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACCGGGCATTTGACAGCTCGAAGTGATGTTTACGGTTTTGGGGTGGTGCTACTTGAAATGCTTATTGGTAGGAGAGCATTAGACAAGAGCAGGCCCAGCCGAGAGCACAACTTGGTTGAGTGGGCCCGCCCTCTATTAAATCATAATAAGAAACTTCTGAAAATTTTAGACCCAAAACTAGAGGGGCAATATTCAAGTAAAACTGCAATAAAGGTGGCCCAGTTAGCCTACCAATGCCTTAGCCAAAACCCGAAAGGCAGACCGCTAATGAGCCAGGTTGTTGAAATTCTCGAAAACTTTCAGTCAAAGGGGGAAAATGGCGAAGATGAAATTCTTCAGAATGGCGGTACCAGTATAACCCTTTATGAGGTTCCCAAGGGCAGCAATGACCCTCCATCTTAG 1152 0.4149 MGMCFSIEDEKRLSVSDTSAKPKPAGSADRESGAPLVSSSMNIKDLRKSAGHCNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDDSVRSGYKTIEVAIKELNREGFQGDREWLAEVSYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILIDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTAIKVAQLAYQCLSQNPKGRPLMSQVVEILENFQSKGENGEDEILQNGGTSITLYEVPKGSNDPPS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02554 383 SUPERFAMILY Protein kinase-like (PK-like) 52 348 IPR011009 -
Cca09g02554 383 Gene3D Phosphorylase Kinase; domain 1 44 152 - -
Cca09g02554 383 CDD STKc_IRAK 76 350 - -
Cca09g02554 383 Pfam Protein tyrosine and serine/threonine kinase 76 347 IPR001245 GO:0004672|GO:0006468
Cca09g02554 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Cca09g02554 383 PANTHER OS01G0588500 PROTEIN-RELATED 30 378 - -
Cca09g02554 383 Gene3D Transferase(Phosphotransferase) domain 1 153 368 - -
Cca09g02554 383 ProSiteProfiles Protein kinase domain profile. 70 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02554 383 MobiDBLite consensus disorder prediction 15 36 - -
Cca09g02554 383 MobiDBLite consensus disorder prediction 355 383 - -
Cca09g02554 383 MobiDBLite consensus disorder prediction 356 374 - -
Cca09g02554 383 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Cca09g02554 383 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 30 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02554 Cca-Chr9 51110337 51115081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02554 58 347 Glycoside Hydrolase AT3G07070 51.877 1.94e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca09g02554 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02554 - - gmx:100800465 695.656