Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02534 ATGGGTGTTCCACAAACTCCAATTCCCTCTCCACATCTCTATCCACAAGAACTTCAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCCATCATTTTGGTTCTTTTGTTTTACTTGTTCTACCTCAAAAGGAGGGCTTCCTCTCTCTCATCACCACCTCTCCACGTACTTCCTAGAACTACTAATCCACAAACTACTGATCTTTATCCTTCACAACCTTGCCGTTTGGATCTGACAGTGCAATTTCTGGACAAACTTCCAAGAATTTTGTTTGATGAGGATTTAAGAACAAGAGATTCAGTATGTTGTGTTTGCCTGGGAGAATTTGAGCTAAAGGAAGAGCTGCTACAGATCCCTTATTGCAAGCATGTGTTTCACATAAACTGCATAAGTAACTGGCTGCAATCAAACTCCACGTGTCCACTTTGTAGATATTCCATCATTCCCACTACAAAGTTCCTTAATCTAACACCACCTATTGTATCAGAACCACCACAGCAAGGTGGTGTTTCAGGCTCTCCATCGCACATCATCATGCCATTGCCTCATCAACAAGAAGATGAAGTTGGTGCTTCCACAAATACCACCATTTTTCAAGGGAGTGGTGTCTTAATTAGATCATGA 639 0.4116 MGVPQTPIPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHVLPRTTNPQTTDLYPSQPCRLDLTVQFLDKLPRILFDEDLRTRDSVCCVCLGEFELKEELLQIPYCKHVFHINCISNWLQSNSTCPLCRYSIIPTTKFLNLTPPIVSEPPQQGGVSGSPSHIIMPLPHQQEDEVGASTNTTIFQGSGVLIRS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02534 212 Pfam Ring finger domain 107 149 IPR001841 -
Cca09g02534 212 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 4 160 - -
Cca09g02534 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 154 IPR013083 -
Cca09g02534 212 SUPERFAMILY RING/U-box 85 157 - -
Cca09g02534 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 4 160 - -
Cca09g02534 212 SMART ring_2 107 148 IPR001841 -
Cca09g02534 212 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02534 Cca-Chr9 50833859 50835997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02534 5 154 C3H Transcription Factor Family AT4G10150 40.252 2.08e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02534 K19039 - gmx:100806499 333.569