Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02524 ATGCATATTCTAGCAGttgTCGATAGTGGACAACGTATTCAGCTTTTCAACGCGAAAAGTTTCGGAGCAAGATCGGATGAATTGAACCCGGCTTCTACCCAAATACAACGCGTGATTGTTCGCATCGCATTCCTTTTCCTCTTCGTTCTTCCAATTTCCGTGTCTACACCGTATTGCGCCTTTCACAAGTTGGATTATGCTGAGGACTGGTTCCAAAATCTCGTGACTGTTTCTCTAATTGACGATGCTTTTGATGCGAACGATAATGATGGTGTAGCTATTGAAGGGGAAAGATGTGGAATATGTATGGACGTTGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTTCCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTTTATGATACCATTGGAAACAATAAAGTTGAAGATGAGTCATTGTTCAGAGATGATGACTGGTCCATTGAAGAGAAGAATAACACACTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAGGTTCGCAATGGGTTGGCTACTATTGAAGGAGATTCTGATCTAGATACATCAATAGCTTGCGATTCATGTGACATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCGGACAGTACATGGTTATGCCCCAGATGTGTGGTTGATGAAGTGTCTAAAGGAACATCCAATTCAATAGAGAGGACAACCGTGGAATTTAATGCAGATAATAGTAACAGTGAATGCCATGCGGAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACAGGAGAGACAGCTGTTGTTGTCTCGATGGTGGACAGGACAAAATGGGTTCCAGAAACAAGTGAGAAAAGCCCATTACCTTTTGAAGTTGATGGGGATCCAATGACTGAATCATGTATTTTAAAATCTGACACAAATAATCACCAAAATGGGGAAGAGAAGACAGATATGTTACCGATCATGGAGGAAGAACTTGAACTGTCTTTATCAAACAATATATCCTGTAGCCTAACTTCTAAATCCTTAGTGGATAATGATATAAAGAAAAGTGCAAGTCAAGCAAGGAATGGAGCAAGTGGCTTTGACGGGTCCAAGTTATTTGATGAGTCCCATAATAAAACTAGTCCATCCAAAATTGAATCTGATATGGGTCTTCATCTTGGTTTATCAGTGGGCTCTTTTTTATCTGTTGACAATGCAGACAAGAATGAAAAAAAAGATGAAGCAACTGATGTCATTGATAATGCAGACCCGAACGAAACAAAAGATCAAGTAACTCATGTCCCAGGCTCAATTTCAGAAGAATGTATTTTGAAAGGAGATGAAATTGAAGTCAATGCTCACAAGGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTACAGTAATGAGCAAGTTCATATAAAAACTGGTGATGGAGATGCCATGCCTGAACTTCCAGATGAAGTTGCACAAAAGAAAATTAAAGCTTCTGGTAGTCAAATGAGTAGTACTGATGACTCAGCTGATGCTTGTCTTTTAGAAAAGGCTCAGAAAAATCTTGCTTTTAAACATTCTCCACCAAAGGCAATTGTCACATCGGATATAATGAATATAGTTAAAGGGACAAACCGGAGGCTTTCCAAGGGAATTACTAGCACTAATGCTTGTGACAAGCTATCTGAAAACAGAGGAAATGTGGCTGGGTTGAGGGTTAAAAAGATCATGAAAAGAGCTTCTGATGATGGAGAATCATCCTTGGTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAGATCCTCTATAAATTTTGAGGATAACCATTTTGATCCAAAGCTGCTTGAAGCATTTAGGGTTGCTATAACAGGGCCTAAAACTGACCTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAATCAATGTTGCAGAAAGGAAAAGTTCGTGAAAATCTAACAAAGAAAATTTTTGGGACTTCAAATGGAAGAAGAAAGCGTGCATGGGATAGGGATTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTTCAAAGCCTGAAAAGGTCGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGACAGTCCAGAATCAAAGCAAGCTTCTGAATGTCAGGCCAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTGTTCCCACGGAAAGAGGATGTCAAACCTCTCTCTATTCTTAAAACCATTGGTAACTCAGAGAAAACTAAACAAAACCCATCTGAAAAAGTACCAAATCTATCTGTTGGTAATAATACTAATAAAGCAACAGATGTAAATAATCTTTTGTCAAAAGCCAGTGTTTGTTCATCTGAAAAAAAAGTAGATAAGAAGATTGTACATGGTCCAGTTGGTGACAATTCAGCTTCTGGTAAAGTGCGTTTAAACAATCACTCAGAAAGGACATCAGTTTCTTCAGCTGGTTCGAAAACTAGCACAAAGGATTCAGGCCTTAAATCTGGTTGTATGAAAACTGATAAAAGGAAATGGGCCTTGGAGGTTCTTGCGAGGAAAACAGCTGCCACAAGTGGGAACACATCAAATGGAAATCAGGAAGACAATGCAATTTTTAAAGGAAATTATCCTTTGCTTGCCCAGCTGCCAATTGATATGAGACCAGTATTGGCACCTTGTCGCCACAATAAAATTCCTATATCAGTGAGGCAGACCCAGCTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAATCTGGCAGTGATTCGCAGAACTGCAGATACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGATGTTGCTGATAGATCAAACAGCAAGCTTGTGTATTTGAACCTTTGTTCACAAGAGCTCTTGCATCGCACAAATAACACAAAATCCAATGTAGCCACAGATACAAGTACACCAGCCTCATCAGCAATGCTTACTGATCAACAATCGGACCCAAATACTGATGATCTTTCAACTGACCCTGCAGTTGAAACAGCCTTGAAAAATGCTGGTCTATTGTCTGATTCCCCACCTAGCAGTCCACATGAGAACAGAGAAACATGTAATGGTGATGTGTCAGGGCCCGATAATGTATTTGAACTGGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGGAGATGAAGATTACATTGGTGCTAGCGTTTCAAGGGTCTCAAATCCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACATGAAAAAGTCAGATATCTCTCTGGATTGGGCAGACTGTGAAGGGTCTGTAAGAAATGAAGTGCCAGGTGATGCATCCTGCTCATCAAATTGTCACAATGATGCAGTTGATAATGATAGGGCTTCTGCAATTGATACGGAGATGGGCCAGCCTTTTTCTTCTGAGCAACTACCGTGTGAGGGTGCCGTTGAGCCACTTGATTCAGAATTTGAAGAATTATACGGCCCAGACAAAGAACCACCCATAAAAATATTTCCGGAGGTGGAATCAAGATCATTACATGGAGACGACAAGACAAAAACTCTAAGCGAGGCCAGTGACTTGCATAATGACAACAATGCAGTAAATGCTTCGGAACTGGGGAACGAGAATCTCACAGAAAAGGTTTCTGTTACTACCAACACCAACAAATCTTCTAATATATCTGAGACTAGTGAAAATTTCCAAAGAAAGGATGAGAAATCTGATCTCATTGCTAAGCAAACCGAATCTGTAAATCTTGTAACTAAAAAGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGTATGCTGAAGCAGCTCAACAGAACAGTAAAAATTGATGCATATGCATCCACAAAGGGAGAGAGACTTGGTCATCGTTGGAGTTCTACCCATCGAAGGGAGAGAAAGAGATGCGAGCACTATCGAATAGAAACAGATGTGACCATCATTAGAGTGTGCTGTTACAGTTATATCTACTTTCCCAACAGTCAGCATAGTTGTTGTCTCTACCACTACGGTTGTATCCTCTGTTATTGTAACCATCATTGCGGTTGCTACAACAAATTTGTGTTGGGTACGTCTGTCTCGCAAGTCGTGTCTCTTCTACACCAAGTCGTGCCTTTTCTTTGTAGCGTGTTTCCTTTGTGTGGTGTCGTCTCTCCTCTAGGCATCGTGGCTCCTTCAGTGTTGTATCTCCTCCATGTGTCATAG 4374 0.4037 MHILAVVDSGQRIQLFNAKSFGARSDELNPASTQIQRVIVRIAFLFLFVLPISVSTPYCAFHKLDYAEDWFQNLVTVSLIDDAFDANDNDGVAIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWASITNLCPLCQNEFQLITCVPVYDTIGNNKVEDESLFRDDDWSIEEKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIEGDSDLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVVDEVSKGTSNSIERTTVEFNADNSNSECHAEDSFSGKVSVSVADTGETAVVVSMVDRTKWVPETSEKSPLPFEVDGDPMTESCILKSDTNNHQNGEEKTDMLPIMEEELELSLSNNISCSLTSKSLVDNDIKKSASQARNGASGFDGSKLFDESHNKTSPSKIESDMGLHLGLSVGSFLSVDNADKNEKKDEATDVIDNADPNETKDQVTHVPGSISEECILKGDEIEVNAHKDNARVAGGKRKHADYSNEQVHIKTGDGDAMPELPDEVAQKKIKASGSQMSSTDDSADACLLEKAQKNLAFKHSPPKAIVTSDIMNIVKGTNRRLSKGITSTNACDKLSENRGNVAGLRVKKIMKRASDDGESSLVVQNLRKEIREAVRNRSSINFEDNHFDPKLLEAFRVAITGPKTDLVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRASKPEKVETLKSVLDLLRKGSDSPESKQASECQAKNPILSRLYLADTSVFPRKEDVKPLSILKTIGNSEKTKQNPSEKVPNLSVGNNTNKATDVNNLLSKASVCSSEKKVDKKIVHGPVGDNSASGKVRLNNHSERTSVSSAGSKTSTKDSGLKSGCMKTDKRKWALEVLARKTAATSGNTSNGNQEDNAIFKGNYPLLAQLPIDMRPVLAPCRHNKIPISVRQTQLYRLTERLLRNTNLAVIRRTADTELAVADAINIEKDVADRSNSKLVYLNLCSQELLHRTNNTKSNVATDTSTPASSAMLTDQQSDPNTDDLSTDPAVETALKNAGLLSDSPPSSPHENRETCNGDVSGPDNVFELDSHPELDIYGDFEYDLGDEDYIGASVSRVSNPKQEQNESKVKLVFSTMNMKKSDISLDWADCEGSVRNEVPGDASCSSNCHNDAVDNDRASAIDTEMGQPFSSEQLPCEGAVEPLDSEFEELYGPDKEPPIKIFPEVESRSLHGDDKTKTLSEASDLHNDNNAVNASELGNENLTEKVSVTTNTNKSSNISETSENFQRKDEKSDLIAKQTESVNLVTKKVEAYIKEHIRPLCKSGVITADQYSMLKQLNRTVKIDAYASTKGERLGHRWSSTHRRERKRCEHYRIETDVTIIRVCCYSYIYFPNSQHSCCLYHYGCILCYCNHHCGCYNKFVLGTSVSQVVSLLHQVVPFLCSVFPLCGVVSPLGIVAPSVLYLLHVS 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02524 1457 PANTHER RING/U-BOX PROTEIN 169 1323 - -
Cca09g02524 1457 Pfam Zinc finger, C3HC4 type (RING finger) 99 137 IPR018957 GO:0046872
Cca09g02524 1457 SUPERFAMILY FYVE/PHD zinc finger 212 251 IPR011011 -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 386 414 - -
Cca09g02524 1457 Pfam PHD-finger 212 249 IPR019787 -
Cca09g02524 1457 ProSiteProfiles Zinc finger PHD-type profile. 131 251 IPR019787 -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 831 874 - -
Cca09g02524 1457 SUPERFAMILY RING/U-box 88 144 - -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 435 462 - -
Cca09g02524 1457 Coils Coil 618 638 - -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 1005 1037 - -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 1256 1272 - -
Cca09g02524 1457 SMART ring_2 189 248 IPR001841 -
Cca09g02524 1457 SMART ring_2 99 137 IPR001841 -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 1256 1282 - -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 1049 1068 - -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 784 809 - -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 1005 1068 - -
Cca09g02524 1457 ProSiteProfiles Zinc finger RING-type profile. 99 138 IPR001841 -
Cca09g02524 1457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 178 IPR013083 -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 435 454 - -
Cca09g02524 1457 SMART PHD_3 197 249 IPR001965 -
Cca09g02524 1457 PANTHER RING FINGER PROTEIN 41, 151 169 1323 - -
Cca09g02524 1457 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
Cca09g02524 1457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 249 IPR013083 -
Cca09g02524 1457 MobiDBLite consensus disorder prediction 842 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02524 Cca-Chr9 50754599 50769905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02524 99 191 C3H Transcription Factor Family AT3G58030 33.663 9.13e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca09g02524 PHD 4.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02524 - - gmx:100808102 2035