Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02515 ATGGCCCCCTCAGCCATGGTATGTGCTCTATGTCTCTTCCTTTTCCACCTCCAAACCACAAGAGCAAACAAAGCAGTTACCTGCAACAGCTTAAGATGCGGCGATGTAGATATCCAGTTTCCCTTCGGTTTGAAAGGTTCGAGCCAAAGCCCTCGCTGCTGGTATTACCCCAACCCCACTTTCCAACTCTCGTGCCTCAACGCCACAAAAACAATCCTCACCCTCCCACGTTTCGGGAACCTAATCGTCAACAGCATCGATTACGAAACCCAAACCATCCGAGTCAACGACCCTAACGGCTGCCTCCCCAAACGCTTCTTGCAAAAGTGGAACCTTTCGGATTCGCCTTTTATTCTGAACCCCATGATTTACGGAACCAATCCCTACAACCTCACTTTCCTGCGTTGCCCCTCCAACGTTACGGACTCCTCTCAATTCCCGTTACTGCCGATTTCCTGCCTTAGCGACAACAGAAACTACTCCGTGGTGGTTTCGTGGTCACCCCCTGTTGTGTCTTCACCCATGATGTCTCAACGGTGCGAGCTTCTGACGAGGGCTCTTGTCCCTATTCCCATGATGGACATGCCCATGTGGCCCTTCTGGCCCGATCTCAACATCGACCTTCAGTTGGTCTGGACTCAGCCCAGAGAATGTAGGGACTGTGCTGTTACTGCCCAACGTTGTGGCTTCTCTAAAACCCTTCAACTTGCCTGCTTCCCTAGGGACTCCAACAAAGGTCTTTCAAGAAGTGCGAGATATGGGTTAGCCATAGGAGTGGGAATCCCTGGACTGTTGTGTCTAATAGGGGTTTCATGCTATATCTGCGGTAAGGTTCGGATGTTAACCGAACGGCGAGGGAGCAGAGATTTTCCGGTGACAATTTCCCTTGAGCCCGTTCCTTTTGTAATGGGCCTGGACGGTGCCACAATTGAAAAGTATCCGAAAACCCTGATTGGGGAGAGTGGGCGCTTATTGAAGCCCAATGACAACACGTGCGCAATATGCCTCTCCGAATATGAACCCAAAGAGACGTTGAGGAGCATCCCCGAATGCAACCATTATTTTCATGCTGATTGCATAGACGAGTGGCTCAAATTGAATGCCACCTGTCCTCTCTGCAGGAATTCCCCTGACCCATCTTCCACTCTTTCTTTTTCTTCCTTCTCTCCCACTTCCTCATTGCACTCTCCTCACTCTTCACAATAG 1206 0.5041 MAPSAMVCALCLFLFHLQTTRANKAVTCNSLRCGDVDIQFPFGLKGSSQSPRCWYYPNPTFQLSCLNATKTILTLPRFGNLIVNSIDYETQTIRVNDPNGCLPKRFLQKWNLSDSPFILNPMIYGTNPYNLTFLRCPSNVTDSSQFPLLPISCLSDNRNYSVVVSWSPPVVSSPMMSQRCELLTRALVPIPMMDMPMWPFWPDLNIDLQLVWTQPRECRDCAVTAQRCGFSKTLQLACFPRDSNKGLSRSARYGLAIGVGIPGLLCLIGVSCYICGKVRMLTERRGSRDFPVTISLEPVPFVMGLDGATIEKYPKTLIGESGRLLKPNDNTCAICLSEYEPKETLRSIPECNHYFHADCIDEWLKLNATCPLCRNSPDPSSTLSFSSFSPTSSLHSPHSSQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02515 401 SUPERFAMILY RING/U-box 325 377 - -
Cca09g02515 401 CDD RING-H2_PA-TM-RING 331 374 - -
Cca09g02515 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 396 - -
Cca09g02515 401 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Cca09g02515 401 SMART ring_2 332 373 IPR001841 -
Cca09g02515 401 Pfam Ring finger domain 330 374 IPR001841 -
Cca09g02515 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 379 IPR013083 -
Cca09g02515 401 ProSiteProfiles Zinc finger RING-type profile. 332 374 IPR001841 -
Cca09g02515 401 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02515 Cca-Chr9 50672486 50675253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02515 21 380 C3H Transcription Factor Family AT2G46495 36.314 2.37e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02515 - - gmx:100810240 593.964