Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02499 ATGGCTGACGCAGCTGCTGAAGTAGTAGTCCCAAAGAGGGGAAGGGGCAGAAGGCCCCTGAAGGATAAAACAACAACCCTACTCACATCTGATGATAACAAACAGGACTCCAAGAATCACCAATCTTTCGAGAAAGAATTGCTCCACATGCAGGAAATGCTTCAGAAAATGCGTCTCGAGAAGGAGCACACAGAAGAGCTCTTGAAGGCCAAAGATGAGGCTCTCAAGCAGAAGGAACAAGAACTCAAAAAATTGCAGAAGCTCAAGGAGTTTAAACCTACCCTCAATTTGCCTGTGTTGAaagataatgaacaaaagaaggataagaagaagaaAGGGTGCTCCGAGAAGAAAAGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAACGAACCCTGAGGCAGAATTTAAGGAAACTTCTAACATGTTGGGGGCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCAAGCTGAAAAAGAAGCCTATTTGCAAGTGGTTGCAAAGGAAAAACGTGAGAGTGAGGCAATGAGGTTGTTGGAAGAGGAGCAGAAGCAGAAGACTGCCATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAACAAGGGCAAGAAGAACAAAAAGGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCATGTTCACTAATGATAGGCGACCAGCTCTTGCTGCTGAGAACAAGACAATGTTGGAGGTTACACAAATCACAGCTGAAGAGTGGAAAAAGATGATAGACGATGAAAGGAGACCCTATGAAGAGATGGCAAAGAGGAACAAGGAGAAATATGTCTTAGAAATGGAAGCCTATAAACAGAAAAAAGAAGAGGAAGCTGCCAATCTCATGAAGGAAGAGGAGGAGCATATGAAGCTTCAGAAACAAGAAGCCTTGCAACTCCTTAAGAAGAAGGAGAAAACTGAAAATTTAATCAAGAAAACAAAACAGAAGAAGCAAAACAAGGAGGATAAGAATTCTGATCCAAACAGGCCTAAGAGGCCTCCATCCTCGTACCTCTTATTCAGCATAGAAGCAAGGAAAAGTTTACAGGAGGAGAGACCAGGAATCAACACCTCAACCCTGAATGCACTTGTTTCCTTGAAGTGGAAGGAACTGAGTGAGGAAGATAGACTAATCTGGAATGTGCAAGCATGTAAAGCAATGGAATCATACAAGAAGGAATTGGAGGAATACAACAAATCCCTTGCGGCAACTTCAACTGCAATCCAGGAGCAGAAAACCGAAGAATGA 1332 0.4182 MADAAAEVVVPKRGRGRRPLKDKTTTLLTSDDNKQDSKNHQSFEKELLHMQEMLQKMRLEKEHTEELLKAKDEALKQKEQELKKLQKLKEFKPTLNLPVLKDNEQKKDKKKKGCSEKKRPSPPYILWMKDQWNEIKKTNPEAEFKETSNMLGAKWKTVSAEEKKPYEEKYQAEKEAYLQVVAKEKRESEAMRLLEEEQKQKTAMELLEQYMQFKQEAENKGKKNKKEKDPLKPKHPMSAYFMFTNDRRPALAAENKTMLEVTQITAEEWKKMIDDERRPYEEMAKRNKEKYVLEMEAYKQKKEEEAANLMKEEEEHMKLQKQEALQLLKKKEKTENLIKKTKQKKQNKEDKNSDPNRPKRPPSSYLLFSIEARKSLQEERPGINTSTLNALVSLKWKELSEEDRLIWNVQACKAMESYKKELEEYNKSLAATSTAIQEQKTEE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02499 443 MobiDBLite consensus disorder prediction 93 122 - -
Cca09g02499 443 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 233 299 IPR009071 -
Cca09g02499 443 Pfam HMG (high mobility group) box 233 299 IPR009071 -
Cca09g02499 443 Pfam HMG (high mobility group) box 118 179 IPR009071 -
Cca09g02499 443 Pfam HMG (high mobility group) box 358 426 IPR009071 -
Cca09g02499 443 Gene3D High mobility group box domain 216 309 IPR036910 -
Cca09g02499 443 Gene3D High mobility group box domain 339 440 IPR036910 -
Cca09g02499 443 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 29 434 IPR044601 GO:0003677
Cca09g02499 443 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 29 434 - -
Cca09g02499 443 Coils Coil 167 187 - -
Cca09g02499 443 Coils Coil 408 442 - -
Cca09g02499 443 MobiDBLite consensus disorder prediction 215 234 - -
Cca09g02499 443 MobiDBLite consensus disorder prediction 214 237 - -
Cca09g02499 443 Coils Coil 196 216 - -
Cca09g02499 443 CDD HMGB-UBF_HMG-box 358 423 - -
Cca09g02499 443 MobiDBLite consensus disorder prediction 1 41 - -
Cca09g02499 443 MobiDBLite consensus disorder prediction 307 365 - -
Cca09g02499 443 Coils Coil 281 351 - -
Cca09g02499 443 Coils Coil 40 91 - -
Cca09g02499 443 SUPERFAMILY HMG-box 220 306 IPR036910 -
Cca09g02499 443 Gene3D High mobility group box domain 102 183 IPR036910 -
Cca09g02499 443 CDD HMGB-UBF_HMG-box 233 296 - -
Cca09g02499 443 SUPERFAMILY HMG-box 105 180 IPR036910 -
Cca09g02499 443 SMART hmgende2 116 186 IPR009071 -
Cca09g02499 443 SMART hmgende2 232 300 IPR009071 -
Cca09g02499 443 SMART hmgende2 357 427 IPR009071 -
Cca09g02499 443 MobiDBLite consensus disorder prediction 101 118 - -
Cca09g02499 443 CDD HMGB-UBF_HMG-box 119 182 - -
Cca09g02499 443 MobiDBLite consensus disorder prediction 10 41 - -
Cca09g02499 443 SUPERFAMILY HMG-box 353 430 IPR036910 -
Cca09g02499 443 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 117 185 IPR009071 -
Cca09g02499 443 MobiDBLite consensus disorder prediction 307 357 - -
Cca09g02499 443 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 358 426 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca09g02499 HMG_box 5.8e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02499 K09273 - gmx:100783033 525.013