Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca09g02490 | ATGGAAGAACAACAAAACCCTTTCAAGAACCACCCTTATCCCAAGCTCGTAAGAGTacgcgtcgccgacgccgacgccaccgactcctccagcgacgacgacgaccaaccctccgcctcctccacgcgccgccgaGTCAAGTGCTTCGTCAACGAGATTACAGTCCATGGCGGCGTTAATGTTGTTTCCAAGAAAAGAAGGTTCAAGTCCGGCGGTGCTCCGGCGAGTCGGCGGCGGGCGGCGGGGAGGAAATTCCGGGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGTCGCGGCGCGTGCGCCTCTGGCTGGGAACCTACGACACCGCGGAGGAAGCCGCCATTGTGTACGACAACGCGGCCATTCAGCTGCGTGGCGCCGACGCGCTGACGAATTTCATAACGCCGCCAGCGGAGAAAAATAAAAGCGGGTGGTGCTCCGGCGAAGAGTTGCGTTCCCCCACCTCCGTTCTTGGGTGCTGCTCGGAAGGCGAGTCCGTAACCGCAACGATGACTGCAAACGACGTGGCGGAGCCTGCGAGTGAATGCGAATATTCGTGCGTTTCGGGGGATAAGTACTTGAAGTCGGAGTCAGTGTTTCCGATTCCTAGCGATGTGGTATTTGAGTTCGAAAGCACGTTGGATATGTTCAATGTGGCAGAGAGTAGTATATTCCTTGGGGATGATTTGAGTGAAGGGTTTGTTAGTGAGAATTTGGATTTGGGGTTTAGGGAGTGTGATAATTTCCAAGACATTGGGGATTTGTTCGTTTGGGATCCCCTTCTCGCTCTTTGA | 816 | 0.4951 | MEEQQNPFKNHPYPKLVRVRVADADATDSSSDDDDQPSASSTRRRVKCFVNEITVHGGVNVVSKKRRFKSGGAPASRRRAAGRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEKNKSGWCSGEELRSPTSVLGCCSEGESVTATMTANDVAEPASECEYSCVSGDKYLKSESVFPIPSDVVFEFESTLDMFNVAESSIFLGDDLSEGFVSENLDLGFRECDNFQDIGDLFVWDPLLAL | 271 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca09g02490 | 271 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 | 9 | 267 | - | - | |
Cca09g02490 | 271 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 9 | 267 | - | - | |
Cca09g02490 | 271 | ProSiteProfiles | AP2/ERF domain profile. | 84 | 141 | IPR001471 | GO:0003700|GO:0006355 | |
Cca09g02490 | 271 | PRINTS | Ethylene responsive element binding protein signature | 85 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Cca09g02490 | 271 | PRINTS | Ethylene responsive element binding protein signature | 107 | 123 | IPR001471 | GO:0003700|GO:0006355 | |
Cca09g02490 | 271 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cca09g02490 | 271 | SMART | rav1_2 | 84 | 147 | IPR001471 | GO:0003700|GO:0006355 | |
Cca09g02490 | 271 | CDD | AP2 | 84 | 140 | IPR001471 | GO:0003700|GO:0006355 | |
Cca09g02490 | 271 | Gene3D | AP2/ERF domain | 83 | 142 | IPR036955 | GO:0003700|GO:0006355 | |
Cca09g02490 | 271 | Pfam | AP2 domain | 84 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
Cca09g02490 | 271 | SUPERFAMILY | DNA-binding domain | 84 | 140 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca09g02490 | Cca-Chr9 | 50438948 | 50440363 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca09g02490 | 9 | 271 | AP2-EREBP Transcription Factor Family | AT4G11140 | 40.604 | 1.12e-46 | 155 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Cca09g02490 | AP2 | 2.5e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca09g02490 | - | - | ccaj:109806587 | 518.079 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca06g01839 | 06 | 33804338 | 33805246 | Cca09g02490 | 09 | 50438948 | 50440363 | PCT |