Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02490 ATGGAAGAACAACAAAACCCTTTCAAGAACCACCCTTATCCCAAGCTCGTAAGAGTacgcgtcgccgacgccgacgccaccgactcctccagcgacgacgacgaccaaccctccgcctcctccacgcgccgccgaGTCAAGTGCTTCGTCAACGAGATTACAGTCCATGGCGGCGTTAATGTTGTTTCCAAGAAAAGAAGGTTCAAGTCCGGCGGTGCTCCGGCGAGTCGGCGGCGGGCGGCGGGGAGGAAATTCCGGGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGTCGCGGCGCGTGCGCCTCTGGCTGGGAACCTACGACACCGCGGAGGAAGCCGCCATTGTGTACGACAACGCGGCCATTCAGCTGCGTGGCGCCGACGCGCTGACGAATTTCATAACGCCGCCAGCGGAGAAAAATAAAAGCGGGTGGTGCTCCGGCGAAGAGTTGCGTTCCCCCACCTCCGTTCTTGGGTGCTGCTCGGAAGGCGAGTCCGTAACCGCAACGATGACTGCAAACGACGTGGCGGAGCCTGCGAGTGAATGCGAATATTCGTGCGTTTCGGGGGATAAGTACTTGAAGTCGGAGTCAGTGTTTCCGATTCCTAGCGATGTGGTATTTGAGTTCGAAAGCACGTTGGATATGTTCAATGTGGCAGAGAGTAGTATATTCCTTGGGGATGATTTGAGTGAAGGGTTTGTTAGTGAGAATTTGGATTTGGGGTTTAGGGAGTGTGATAATTTCCAAGACATTGGGGATTTGTTCGTTTGGGATCCCCTTCTCGCTCTTTGA 816 0.4951 MEEQQNPFKNHPYPKLVRVRVADADATDSSSDDDDQPSASSTRRRVKCFVNEITVHGGVNVVSKKRRFKSGGAPASRRRAAGRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEKNKSGWCSGEELRSPTSVLGCCSEGESVTATMTANDVAEPASECEYSCVSGDKYLKSESVFPIPSDVVFEFESTLDMFNVAESSIFLGDDLSEGFVSENLDLGFRECDNFQDIGDLFVWDPLLAL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02490 271 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 9 267 - -
Cca09g02490 271 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 267 - -
Cca09g02490 271 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Cca09g02490 271 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Cca09g02490 271 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Cca09g02490 271 MobiDBLite consensus disorder prediction 1 43 - -
Cca09g02490 271 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Cca09g02490 271 CDD AP2 84 140 IPR001471 GO:0003700|GO:0006355
Cca09g02490 271 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Cca09g02490 271 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Cca09g02490 271 SUPERFAMILY DNA-binding domain 84 140 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02490 Cca-Chr9 50438948 50440363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02490 9 271 AP2-EREBP Transcription Factor Family AT4G11140 40.604 1.12e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca09g02490 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02490 - - ccaj:109806587 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01839 06 33804338 33805246 Cca09g02490 09 50438948 50440363 PCT