Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02489 ATGGAATATCTACCCATTTTCTCTTTCATTTCAATGTTGTGTTTGGCTCTGTGGCATGGGAGTGCTGAACCTGTTGAAGACAAGGAGGCTTTGCTTGACTTTGTGAACAAGTTCCCACCTTCTAGGCCTCTGAATTGGAATGAGAGTTCCCCCATGTGTGCTTCCTGGACTGGTGTGACATGCAATGAAGACAAGTCTAGAGTAATAGCAATTAGGTTGCCAGGGGTTGGATTTCATGGCACTATTCCACCTGATACTATTAGCCGCCTCTCAGCACTGCAAACTTTGAGCCTCAGATCCAATGTGATAACTGGCCATTTTCCTTCTGATTTTTCCAATCTAAAGAACTTGTCTTTTCTCTACCTTCAGTTCAACAATTTGTCTGGTCCTTTGCCTGATTTCTCAGCCTGGAAGAACCTCACTGTTGTCAATTTCTCCAATAACCATTTCAATGGCACCATCCCTTTCTCCCTTAACAACTTAACTCAGCTTGCTGGTTTGAACCTTGCAAACAACTCACTCTCTGGTGAAATTCCTGACCTCAAGCTGTCTAGATTGCAGATGCTGAATTTGTCCAACAACAACTTGCAGGGCAGTGTGCCTAAGTCCATGTTGAGGTTTCCTGAGTCTGCATTCTCTGGGAATAACATTTCCTTTGGAAGTTCTCCTGCAGTTTCTCCCGCGGCGCCTCAACCGGCTTATGAGCCTTCTCTGAAGTCTAGGAAGCGTGGAAGGCTCAGCGAGATGGCTCTGCTGGGAATCATTGTTGCTGGTGGTGTTTTAGGACTTTTAGCTTTTGTTTCTTTGATGTTTGTGTGCTTCTCAAGAAGCAGTGACGAGGATGAGGCCTTCAGTGGAAAGTTGCACAAGGGAGGAATGTCTCCTGAAAAGGCAGTCTCAAGGAACCAGGATGCAAATAATAAGCTGGTTTTCTTTGAGGGATGTAGTTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTGCTGGGAAAGGGAACTTTTGGTACTGCATACAAGGCAATACTAGAGGATGCAACCACGGTTGTTGTGAAGAGGTTGAAGGAGGTAGCCGTTGGAAAGAAGGATTTTGAGCAGCATATGGAGATTGTAGGAAGTCTTAAGCATGAGAATGTGGTTGAGCTCAAGGCGTATTATTATTCCAAAGATGAGAAACTCATGGTGTATGATTACCACAGTCAGGGTAGCATCTCTTCCATGTTGCATGGTAAAAGAGGAGAGGATAGAGTGGCTTTAGATTGGGATACTCGGCTGAAAATAGCCTTAGGTGCTGCAAGAGGCATTGCACGTATCCACCTTGAGAATGGTGGCAAGCTTGTACATGGCAACATCAAATCCTCAAACATCTTTCTCAACACCAAACAGTATGGCTGTGTGTCTGACCTTGGCCTGGCAACCATATCAAGCTCACTAGCCCTGCCAATCTCACGAGCAGCCGGTTACCGTGCACCCGAAGTTACCGACACCAGAAAGGCAGCACAGCCCTCAgatgtttacagctttggtgtggtgctgctagagCTTCTGACTGGGAAGTCTCCTATCCACACAACTGGTGGTGATGAGATTATCCACCTTGTGAGGTGGGTTCATTCTGTTGTACGTGAGGAGTGGACAGCTGAAGTGTTTGACTTGGAGCTGATGAGATATCCAAACATAGAAGAAGAGATGGTTGAGATGTTGCAGATAGCCATGTCATGTGTGGTGAGGATGCCTGATCAGAGGCCAAAGATGTGTGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGGTTGATGCAGAGACTAAAATTTCTCAACGTGACACTGGTAACACTCCTTCCACTCCTTCCTACATCTTAAGAGGAAGTGAATGA 1881 0.4487 MEYLPIFSFISMLCLALWHGSAEPVEDKEALLDFVNKFPPSRPLNWNESSPMCASWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLSALQTLSLRSNVITGHFPSDFSNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNFSNNHFNGTIPFSLNNLTQLAGLNLANNSLSGEIPDLKLSRLQMLNLSNNNLQGSVPKSMLRFPESAFSGNNISFGSSPAVSPAAPQPAYEPSLKSRKRGRLSEMALLGIIVAGGVLGLLAFVSLMFVCFSRSSDEDEAFSGKLHKGGMSPEKAVSRNQDANNKLVFFEGCSYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYDYHSQGSISSMLHGKRGEDRVALDWDTRLKIALGAARGIARIHLENGGKLVHGNIKSSNIFLNTKQYGCVSDLGLATISSSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMCEVVKMIENVRQVDAETKISQRDTGNTPSTPSYILRGSE 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02489 626 Gene3D Transferase(Phosphotransferase) domain 1 402 616 - -
Cca09g02489 626 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Cca09g02489 626 PANTHER PROTEIN, PUTATIVE-RELATED 17 605 - -
Cca09g02489 626 MobiDBLite consensus disorder prediction 606 626 - -
Cca09g02489 626 Gene3D Ribonuclease Inhibitor 137 224 IPR032675 -
Cca09g02489 626 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02489 626 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Cca09g02489 626 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cca09g02489 626 PANTHER OS05G0588300 PROTEIN 17 605 - -
Cca09g02489 626 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Cca09g02489 626 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Cca09g02489 626 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Cca09g02489 626 MobiDBLite consensus disorder prediction 603 626 - -
Cca09g02489 626 SUPERFAMILY L domain-like 37 205 - -
Cca09g02489 626 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02489 Cca-Chr9 50422245 50426487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02489 17 621 Receptor kinase-like Gene Family AT4G23740 65.273 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca09g02489 Pkinase 1.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02489 - - gmx:100804799 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01838 06 33788656 33792072 Cca09g02489 09 50422245 50426487 PCT