Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02487 ATGAACGACATAGATGTCTCAAGCCAAATCCAGCAGATGGTGAAGTTCATTCGTCTGGAAGCGGAGGACAAAGCTAATGAGATTTTTATCTCTACCGAAGAGGAATTCGATATCGAGAAGTTGCAGTTGGTCGAAACTGAAAAGAAAAAGATTAGACAAGAATTCGAACGCAAAAAACGCCAAGTTGAAATTCGAAAGAAAATTGAGTACTCGATGCAACTGAACTCTTCTCGGATTAAAGTTCTTCAAGCTCAAGATGATGTGATTAGTTCCATGAAAGAAGCTGCATCCAAGGAACTTTTGAATGTGAGtcatcatcatcattttagtcttcatcatcatcatGAGTACAGGAGCCTTTTAAAAGATCTCATTGTCCAGAGTTTGTTAAGATTAAAAGAACCTTCTGTCTTATTGCGATGTCGGAAACATGACCTACACTTGGTGGAGCATGTGCTAGATTCAGCTGCACAAGAGTATGCAGATAAAGCAAATGTTGATCCCCCAGAGATCATTATTGACAACCAAGTTTATCTTCCACCAGGACCTAATCATCACAATGTTCATGATCCCTATTGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTTCGTAAAAAGCTTCCAGAGATCCGAAAACATCTCTTTGGACAAGTCATTGCTTGA 714 0.3852 MNDIDVSSQIQQMVKFIRLEAEDKANEIFISTEEEFDIEKLQLVETEKKKIRQEFERKKRQVEIRKKIEYSMQLNSSRIKVLQAQDDVISSMKEAASKELLNVSHHHHFSLHHHHEYRSLLKDLIVQSLLRLKEPSVLLRCRKHDLHLVEHVLDSAAQEYADKANVDPPEIIIDNQVYLPPGPNHHNVHDPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKHLFGQVIA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02487 237 Coils Coil 41 61 - -
Cca09g02487 237 Gene3D - 1 62 - -
Cca09g02487 237 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 237 IPR002842 GO:0033178|GO:0046961|GO:1902600
Cca09g02487 237 PANTHER ARCHAEAL/VACUOLAR-TYPE H+-ATPASE SUBUNIT E 1 237 - -
Cca09g02487 237 SUPERFAMILY V-type ATPase subunit E-like 87 233 - -
Cca09g02487 237 Hamap V-type proton ATPase subunit E [atpE]. 8 233 IPR002842 GO:0033178|GO:0046961|GO:1902600
Cca09g02487 237 Pfam ATP synthase (E/31 kDa) subunit 16 232 IPR002842 GO:0033178|GO:0046961|GO:1902600
Cca09g02487 237 Gene3D - 92 235 IPR038495 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02487 Cca-Chr9 50398584 50402067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02487 1 237 Primary Pumps ATPases(2) AT4G11150 68.354 2.11e-115 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02487 K02150 - gmx:100500452 403.675