Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02479 ATGGGCAACAACTGCAGCAGCAACAGCACTTACTCGCACGACCCTCCCCACCGCCACAACGGCATAGCCGTCCTCCCTCCGAACTCCACCCCCTCCCCCCCTCCTCCAGCGCCCTCTTCCCTGGGCCGCGTGCTGGGCCGCCCCATGGAGGACGTCCGCTCCATGTACGTCTTCGGGCCCGAGCTGGGCCGCGGACAGTTCGGCGTGACGTATCTGGTGACGCACAAGGCGACGAAGGAGCAATTCGCGTGCAAGTCAATCGCCACGCGGAAGCTGCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGGTGAACCGCGACGACATCGAGGACATCCGGCGCGAGGTCCAAATCATGCACCACCTCACCGGCCACCGCAACATCGTCGAGCTCAAGGGCGCCTACGAGGACCGCCACTCCGTCAACCTCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGCATCATCGCCAAGGGTCACTACTCCGAACGCGCCGCCGCCAACTCCTGCCGTCAGATCGTCACCGTCGTCCACAATTGCCACTCCATGGGCGTCATGCACAGAGACTTGAAACCTGAAAACTTCCTGTTGCTCAGTAACAAGGACGATTCTCCTCTCAAGGCCACGGATTTTGGCCTCTCTGTCTTCTTCAAACCAGGAGATGTGTTTAGAGATCTTGTTGGGAGTGCTTACTATGTTGCTCCGGAGGTGCTGAGAAGAAGTTATGGGCCTGAAGCTGATATTTGGAGCGCTGGGGTGATATTGTACATTCTGCTTTCTGGTGTTCCACCTTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCCATTCTTCGTGGGCATATTGATTTTGCATCGGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTGCGAGCTGATCCTAAAGAACGGCTTTCAGCAGTTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGATAAGCCTCTTGATATTGCTGTTTTATCCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAAAAAGTAGCCCTGAAGGTTATTGCTGAAAACCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGTGGAACAATCACATTTGAAGAGTTGAAAGCTGGTCTCCCAAAATTGGGTAGTAAACTTTCTGAGTCTGAAGTAAGGCAGTTAATGGAAGCGGCTGATGTGGATGGAAATGGAACCATTGATTACATTGAATTTATAACTGCTACCATGCACATGAATAGAATGGAAAGAGAGGATCACCTATATAAAGCTTTTGAATATTTTGACAACGATAAGAGCGGGTACATCACAGTGGAGGAGTTGGAATCTGCCCTTAAGAAGTATAATATGGGTGATGAGAAAACAATAAGGGAGATCATTGCCGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACGTAACTCACAAAACCCACCGACGTCTCAAATAG 1632 0.4706 MGNNCSSNSTYSHDPPHRHNGIAVLPPNSTPSPPPPAPSSLGRVLGRPMEDVRSMYVFGPELGRGQFGVTYLVTHKATKEQFACKSIATRKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVNRDDIEDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIIAKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLSNKDDSPLKATDFGLSVFFKPGDVFRDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDNDKSGYITVEELESALKKYNMGDEKTIREIIAEVDTDNDGRINYDEFVAMMRKGNPDVTHKTHRRLK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02479 543 Coils Coil 126 129 - -
Cca09g02479 543 SUPERFAMILY EF-hand 387 528 IPR011992 -
Cca09g02479 543 ProSiteProfiles EF-hand calcium-binding domain profile. 498 533 IPR002048 GO:0005509
Cca09g02479 543 ProSiteProfiles Protein kinase domain profile. 56 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02479 543 MobiDBLite consensus disorder prediction 1 15 - -
Cca09g02479 543 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Cca09g02479 543 Pfam Protein kinase domain 133 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02479 543 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 125 534 - -
Cca09g02479 543 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 28 94 - -
Cca09g02479 543 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Cca09g02479 543 SUPERFAMILY Protein kinase-like (PK-like) 29 362 IPR011009 -
Cca09g02479 543 MobiDBLite consensus disorder prediction 27 41 - -
Cca09g02479 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Cca09g02479 543 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Cca09g02479 543 Gene3D - 356 534 - -
Cca09g02479 543 Coils Coil 93 93 - -
Cca09g02479 543 SMART efh_1 502 530 IPR002048 GO:0005509
Cca09g02479 543 SMART efh_1 431 459 IPR002048 GO:0005509
Cca09g02479 543 SMART efh_1 467 495 IPR002048 GO:0005509
Cca09g02479 543 SMART efh_1 395 423 IPR002048 GO:0005509
Cca09g02479 543 ProSiteProfiles EF-hand calcium-binding domain profile. 463 497 IPR002048 GO:0005509
Cca09g02479 543 Gene3D Phosphorylase Kinase; domain 1 123 175 - -
Cca09g02479 543 MobiDBLite consensus disorder prediction 1 43 - -
Cca09g02479 543 Gene3D Phosphorylase Kinase; domain 1 44 104 - -
Cca09g02479 543 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Cca09g02479 543 Gene3D Transferase(Phosphotransferase) domain 1 176 355 - -
Cca09g02479 543 SMART serkin_6 56 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02479 543 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Cca09g02479 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 125 534 - -
Cca09g02479 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 94 - -
Cca09g02479 543 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Cca09g02479 543 CDD STKc_CAMK 56 347 - -
Cca09g02479 543 Pfam EF-hand domain pair 396 456 IPR002048 GO:0005509
Cca09g02479 543 Pfam EF-hand domain pair 466 528 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02479 Cca-Chr9 50307607 50312579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02479 42 540 EF-hand Containing Proteins AT4G23650 74.549 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca09g02479 Pkinase 7.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02479 K13412 - gmx:100777096 915.22