Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02476 ATGGAACAGAAAAGCATTCTGATATCGGCTTtgggtgttggggtgggagtgggagtggggattggattggCTTCTGGACAAAGTGTTGCCAAATGGGGAGCCAACACTTTTTCCTCAAACGCTATCACTGCTGAGAAGATGGAGCAGGAAATGCTCAGACAAGTTGTTGATGGAAGACAAAGCAACGTCACTTTTGATAAATTCCCTTATTATCTCAGTGAACAGACACGAGTTTTGCTGACAAGTGTGGCTTATGTTCATTTAAAGCATGCTGAGGTTTCTAAACATACACGAAATCTTGCTCCTGCAAGCCGGACTATTCTGCTTTCAGGGCCAGCAGAACTTTATCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTGTTAGATTTAACTGACTTTTCATTGAAGATTCATAGTAAATATGGTTCTTCCAACAAAGAATCTTATTTCAGAAGATCCACTTCAGAGTCTACCTTGGAGCGGCTATCTGATCTATTTGGGTCATTTTCAATCTTTTCACAAAGGGAGGAACCTAAAGGCAAAATGCACAGGCCTAGCAGTGGAGTGGACCTCCAATCAATCCTTTTGGTTTGCAGGGGGTCTGAAGCGTCATGTAATCCTCCAACACTCCGTAGGAATGCTTCCTCCTCTTCAAATATAAGTGGCCTTGCTTCGCAAACCAATCCTACAAATTCAGCTCCTCTGAAGCGCACAACCAGCTGGTCTTTTGATGAAAAGCTTCTTATACAGACTCTTTATAAGGTTCTGGTTTTTGTTTCAAAAACCTATCCCATTGTGCTATATTTGCGAGATGTTGATAAGCTGTTATATAAATCACAAAGGATATATAACCTGTTCCAGAAGATGTTGAAGAAATTATCTGGACCAATTCTGATTCTTGGTTCACGAGTTCTAGATTCTGGTAATGAATATGAAGACGAAGATGAGAAGCTTAATTCACTCTTCCCATACAACATAGATATCAGGCCTCCAGAAGATGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAAGATATGAAGATGATACAAGTTCAGGATAACAAAAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATTTGTGTTGCCGACACCATGGTTCTCAGTAACTACATAGAAGAGATTATTGTGTCAGCAATTTCTTATCATTTGATGAAAAACAAAGACCCTGAATACAGAAATGGGAAACTCGTTATTTCTAGCAATAGTTTGTCCCATGCTTTGAGTATATTCCACAAGGGGAAAACCAGTGGAAAAGAAAAATCAAAATTGGAAGCCGTAAAATCTGAGATGCAAGGAGAGGAAGGAACTGCTATGAAACCAGAAGCGAAGTCGGAAAATGTTGCTCCTGTAAAAAAGGCTGAAGCAGATACATCAACTTCAGCGGAAAAGGCAGATGGTGAAAAACCAGTTACTGCATCCAAAACTACTGAAGTTCCTCCGGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAATGAGATTGATGTCACATTCTCTGACATTGGCGCCTTAGATGAGACCAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTGTTTGGACCTCCCGGCACCGGGAAGACAATGCTGGCAAAGGCCATTGCAAAGGAGGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTCACACTTGCAGCCAAGGTCTCCCCTACCATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAAAGGACCAGAGTTGGGGAGCATGAAGCCATGAGGAAGATAAAGAATGAGTTTATGAGCCATTGGGATGGACTTTTGACAAAACAAGGGGAGAGAATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGACCTCGATGAAGCTATTATTAGGCGATTTGAAAGAAGAATTATGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATTATGAGGACGCTTTTGGCAAAAGAAAAGGTGGACAAGGAACTTGATTTTAAGGAACTAGCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTGTGCACAACTGCTGCTTATCGGCCTGTTAGAGAGCTAATTCAGCAAGAGAGGCTAAAGAGTCTGGATAAAAAGCAGAAAGCTGCAAAGGGACACAATAAAGATGTCCAAGATAGTCAAGGAGGACAATCTATTGTAGGAAATACTCGAGATGCTCTACATGGAGAAGAGGAAGTTAAACAGACAAGAGTTATTACCCTTAGGCCATTGAACATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAATGAGTTGAAACAGTGGAACGATTTGTACGGAGAAGGCGGTTCAAGGAAGCAGCAGCAATTGTCTTACTTCCTATGA 2571 0.4092 MEQKSILISALGVGVGVGVGIGLASGQSVAKWGANTFSSNAITAEKMEQEMLRQVVDGRQSNVTFDKFPYYLSEQTRVLLTSVAYVHLKHAEVSKHTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIHSKYGSSNKESYFRRSTSESTLERLSDLFGSFSIFSQREEPKGKMHRPSSGVDLQSILLVCRGSEASCNPPTLRRNASSSSNISGLASQTNPTNSAPLKRTTSWSFDEKLLIQTLYKVLVFVSKTYPIVLYLRDVDKLLYKSQRIYNLFQKMLKKLSGPILILGSRVLDSGNEYEDEDEKLNSLFPYNIDIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHIMEVLAANDLDCDDLDSICVADTMVLSNYIEEIIVSAISYHLMKNKDPEYRNGKLVISSNSLSHALSIFHKGKTSGKEKSKLEAVKSEMQGEEGTAMKPEAKSENVAPVKKAEADTSTSAEKADGEKPVTASKTTEVPPDNEFEKRIRPEVIPANEIDVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKIMRTLLAKEKVDKELDFKELATMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKSLDKKQKAAKGHNKDVQDSQGGQSIVGNTRDALHGEEEVKQTRVITLRPLNMQDFKEAKNQVAASFAAEGAGMNELKQWNDLYGEGGSRKQQQLSYFL 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02476 856 Pfam ATPase family associated with various cellular activities (AAA) 565 695 IPR003959 GO:0005524|GO:0016887
Cca09g02476 856 CDD AAA 563 696 - -
Cca09g02476 856 Gene3D - 697 776 - -
Cca09g02476 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 760 IPR027417 -
Cca09g02476 856 MobiDBLite consensus disorder prediction 214 242 - -
Cca09g02476 856 Pfam AAA+ lid domain 719 756 IPR041569 -
Cca09g02476 856 MobiDBLite consensus disorder prediction 443 495 - -
Cca09g02476 856 ProSitePatterns AAA-protein family signature. 668 687 IPR003960 GO:0005524|GO:0016887
Cca09g02476 856 MobiDBLite consensus disorder prediction 443 505 - -
Cca09g02476 856 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 856 - -
Cca09g02476 856 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 856 - -
Cca09g02476 856 MobiDBLite consensus disorder prediction 759 791 - -
Cca09g02476 856 SMART AAA_5 561 698 IPR003593 -
Cca09g02476 856 Gene3D - 524 696 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02476 Cca-Chr9 50272085 50279939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02476 525 757 Calmodulin-binding Proteins AT3G56690 38.136 7.79e-43 166