Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02467 ATGGATGAATTTGCGTCCTTGAGGAACTGGGATTTGGAAGCTATTGTGAGAGGAAGCACCGGTGAAGCCACCACCATGGATGATCCAAACCCTGATTTCTCTTACTTCTTCTCTGAACAAGATGCGATGCTTGATACCTTTCCCGAATTCTCAGAAACCACGAGGGTCCTTGATGATTTGGAAGAGCTTTACAAACCTTTCTACCCAGTTTTTCACCCTCTTTCACCACACACCATTGTTAAAACTTCCCTGCCTATCCCCATAGAACCCGAACAGGTCAAAGAACTCAAAGCATCAGAAGAGAAAGTAGCTCTACAAGGGTCAAAAGTTCCCGCAGCACCTAAATGCAAAAAAAGCAAGAAGAGCCAGAACAAGAGTGTGGTGAAGCAGGTGACAACAGCAGAAGGTCTTGATGATGCATGGGCATGGCGTAAATATGGACAGAAACCGATAAAGGGTTCACCCTATCCTCGAAGCTACTATAGGTGCAGCAGTTCCAAAGGGTGTTTGGCCAGGAAACAAGTTGAAAGGAGCCACTTAGATCCTTCTGCTTTCTTGGTAACATACACTGCTGAACACAGCCATCCACACCCAACTCGAAGAAACTCTCTTGCTGGGACCACAAGGAAGAACAATACCATAGTTCCTCCTCCAACCACTCGTCACCAAAAGAATTGTTCATCAAGGACACCTTTGGTGGTGAAAGATAATGGACTTGTACCAAGTGTGCCACAATGCATGGACTTGAAGAAAGAGGATGATTTTCTTGAGTGGTTGGATGATGAAGGTGCTCAATTTGGTGATGGTTGGATTCCTACCTCCGATCTTGAGAAACTGATTGGACTTGAATGCCAACATTTTGCATTTGATGGCGGTTTCACTGATGGTTTTTCACATGCTTAG 903 0.4496 MDEFASLRNWDLEAIVRGSTGEATTMDDPNPDFSYFFSEQDAMLDTFPEFSETTRVLDDLEELYKPFYPVFHPLSPHTIVKTSLPIPIEPEQVKELKASEEKVALQGSKVPAAPKCKKSKKSQNKSVVKQVTTAEGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPSAFLVTYTAEHSHPHPTRRNSLAGTTRKNNTIVPPPTTRHQKNCSSRTPLVVKDNGLVPSVPQCMDLKKEDDFLEWLDDEGAQFGDGWIPTSDLEKLIGLECQHFAFDGGFTDGFSHA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02467 300 SUPERFAMILY WRKY DNA-binding domain 131 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g02467 300 Pfam WRKY DNA -binding domain 138 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g02467 300 ProSiteProfiles WRKY domain profile. 132 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g02467 300 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 9 257 - -
Cca09g02467 300 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 9 257 IPR044810 GO:0003700
Cca09g02467 300 MobiDBLite consensus disorder prediction 193 227 - -
Cca09g02467 300 Gene3D WRKY domain 119 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g02467 300 MobiDBLite consensus disorder prediction 200 227 - -
Cca09g02467 300 SMART WRKY_cls 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02467 Cca-Chr9 50170247 50171853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02467 1 243 WRKY Transcription Factor Family AT4G23550 46.032 1.74e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g02467 WRKY 3.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02467 K13426 - gmx:102663255 478.404