Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02461 ATGGGTCACCACTCTTGCTGCAACCAACAGAAAGTTAAAAGAGGGCTTTGGTCTCCTGAAGAAGATGAGAAACTCATCAGATACATTACAACTCATGGCTATGGCTGTTGGAGTGAAGTTCCCGAGAAAGCTGGGCTTCAAAGGTGCGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTGAGACCAGATATTAGAAGAGGCAGGTTTACACCCGAAGAGGAGAAGTTAATTATAAACCTTCATGGGGTCGTAGGAAACAGATGGGCTCACATTGCAAGCCACTTACCGGGTCGAACGGATAATGAGATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCGGTGTCATCAACCACCATTGCACAAAGTATCGATCATAATCCTTCCCATTTCAACTTCAATTCCAATGTACTAGACCACTTTGCCAACCAAGATAACCTACAAACAAAACCACCAGTTCAAGAAACCTTATTTTCCTCAACATGCCCTTTGTTCATGTTTGACACTAGTTCACTAGAAAGCACAGCAACAGATCACTGCAATAGTGTGAGAGTAGAACCCTTTCAAGACGCTATGGGTTTGAGCACTGAAACATGGAACTTAAGCCACCACCAGGTTCAGGCACTTCCTCCTATTACCGTTACTGTAGGCTTGGACACCACAAACTACTTGCCGCCTTTGGTAGAGAACGTGGATAACATGGTCCCAATTGAGGTACAATCTTGTAACATGGACGAGCATGGAGATATAGCACTAGAGTGCTTGCAGAGACAAGAGTTAAATGAATGGGTGGAAACACAACAACAATGTGCTAACTTTTTGTTCTGGGACAACGTTGATGGACAGCTTGGTGGGGAAGAACTAGCACCAAATTCATCAAATGTGGAAGCAAATAATCTTTCTCCTTTTCCTTCTTCTTTGTGA 942 0.4246 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIINLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSVSSTTIAQSIDHNPSHFNFNSNVLDHFANQDNLQTKPPVQETLFSSTCPLFMFDTSSLESTATDHCNSVRVEPFQDAMGLSTETWNLSHHQVQALPPITVTVGLDTTNYLPPLVENVDNMVPIEVQSCNMDEHGDIALECLQRQELNEWVETQQQCANFLFWDNVDGQLGGEELAPNSSNVEANNLSPFPSSL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02461 313 MobiDBLite consensus disorder prediction 294 313 - -
Cca09g02461 313 CDD SANT 69 112 IPR001005 -
Cca09g02461 313 PANTHER MYB DOMAIN PROTEIN 55 1 312 - -
Cca09g02461 313 Gene3D - 6 66 - -
Cca09g02461 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca09g02461 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca09g02461 313 CDD SANT 17 61 IPR001005 -
Cca09g02461 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca09g02461 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca09g02461 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca09g02461 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca09g02461 313 SMART sant 13 63 IPR001005 -
Cca09g02461 313 SMART sant 66 114 IPR001005 -
Cca09g02461 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca09g02461 313 Gene3D - 68 136 - -
Cca09g02461 313 PANTHER MYB TRANSCRIPTION FACTOR 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02461 Cca-Chr9 50080466 50083068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02461 1 297 MYB Transcription Factor Family AT1G63910 49.718 1.85e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g02461 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02461 K09422 K02947 gmx:100803556 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01815 06 33558897 33566918 Cca09g02461 09 50080466 50083068 PCT