Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02460 ATGATCATTCCAGAGAAGAACCGCAAGGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTACGCGAAGAAGGATTTCAATTTGGCGAAGCACCCTGACATCGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGTTTTAAGTCTCGCGAGTACGTGAGGGAGACCTTTGCTTGGATGCACTACTACTGGTTCCTCACCAACGATGGCATCGAGTTTCTCAGAACCTACCTTAATCTTCCTTCCGAAATTGTCCCTGCCACTTTGAAGAAGCAAGCCAAGCCACCTGGCAGGCCTTTCGGTGGCCCATCCGGTGATCGCCCTAGGGGTCCACCGCGCTTTGAAGGCGGGGAGCGTAGGTTTGGTGGTGACAGGGATGGATACCGTGGAGGTCCCCGGGGACCTGGTGGTGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTCGGGGGTCCTGGCGGAAGGCCTGGCTTTGGCCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGCTCAAATCTGCCTTAA 546 0.5495 MIIPEKNRKEICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFEGGERRFGGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPTSSNLP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02460 181 Pfam Plectin/S10 domain 3 94 IPR005326 -
Cca09g02460 181 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 1 180 - -
Cca09g02460 181 PANTHER 40S RIBOSOMAL PROTEIN S10 1 180 IPR037447 -
Cca09g02460 181 MobiDBLite consensus disorder prediction 91 181 - -
Cca09g02460 181 MobiDBLite consensus disorder prediction 113 129 - -
Cca09g02460 181 Gene3D - 1 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02460 Cca-Chr9 50072809 50074897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02460 1 181 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 76.796 8.59e-78 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02460 K02947 K09422 gmx:100500445 233.802