Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02455 ATGGCTCGAGAATTGTGTGAAGAAAAATCCAAGGACATGGCTTCATCAACGGGGTTCTTCTACTCTGATGTGTCATCAAATAACCCAACGCATCTGATGAACCACATCCAAGGCTTTGTCACCGACCCAGAAATGTTCAATCTCACTACCGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCAGCCACACAGTAGTGAAAGCAACGGTGCCATGTGGAAAAGTTTCTTCGGAAAACCAGGTCAACACGCAGGTCCTTCCTCTTCCAAAACGATGAACGAGTCTTCCAGCaattattataaccatcatgagtataatagtaataataataataataaGCAAGATTTCACATCAGGGATTTCCGAGACAAGTAGCGAGAACTTAATCGTGGGTGGTGGCCATGATTCTTCTGCCCCGTGGCAAGAGAACAGGTTAATGGTCGATGATTCTTCTTTAAGGTGCGTATTCCCTTGTGAAGGTAACGAAAGGCCTAGTCAAGGCCTTTCACTCTCTCTTAGTTCAACCAACCCATCAAGCATCGGGTTGCAATCTTTTGAGCTGAGACAAACAAGCCATCAGCAGCATCTTTCTGATTTTGTTTCGAGAGAGGGGATGTTTGGAAAATCAGTGACCGCTcaacaacaacaacaacaaATGTTGCAAGATGGGTATTTGAGTACCAATTCCAAAGCTGTGAATATTTATCAGGGACATTTTCTAATCAAGAACTCCAAGTTCTTGGTTCCTGCTCAGGAGCTTCTGAACGAGTTTTGTAGTCTAGGAACAAAGGAAAATGATGTAGCAAAGATAAAGAACAAGCAGTGGGAAGAGGGTGGTGGTGGTTCCTCAAAGAACCATTCTCTTAGCTCTTTAGAGTTCGTGGAACTGCAGAAGAGAAAAACAAGGCTCCTCTCGTTGCTGGAAGAGGTTGATAGAAGATACAAGCACTATTGTAACCAAATGAAGGCTGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAATGGGGCAGCCACAGTTTACTCAGCCTTGGCTTTGAAAGCCATGTCTAGACATTTCAGGTGTTTGAAGGATGGAATCATGGATCAAATTCAAGCCACGAGAAAAGCCATGGGAGAGAAAGATCCCGTTGCACCAGGCACAACAAGGGGCGAAACACCAAGGCTTCGAATCATTGACCAATCACTCAGACAACAAAGGGCCTTTCAGCAAATTAGCATGATGGAAACTCATCCTTGGAGACCCCAACGTGGCCTTCCCGAACGTTCCGTTTCAGTGCTTCGGGCTTGGCTTTTCGAGCACTTTCTCCACCCGTACCCAAGCGATGTTGATAAACACATTCTAGCCCGCCAAACCGGCCTCTCCAGAAGCCAGGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTGTGGAAGCCGATGGTGGAGGAGATGTACATGGAAGAAGAGAAGGAGCAACAAAACGACGTAGCATTAGGATCGTCGGAGAATATTCCCGAAGAGGATCAAAAGGCGTCAGATGAGAAGCCAACGCAGGGTCGACTCATTCGAATCGACTCAGAGTGCGTGTCGTCCATCGTAAACAACCAAAACGACACGAAGAGCGGCAAAAGCGTCCAAAACGACGAGCGAATGAATAATAATGCGGAGACGTTCGGGTGTGTGGAGCTGAACTTTTCGTCTTACACACACGAGTCCTCCTCCGGTGGTGGCGTGTCGTTGACGCTAGGGTTACAGCAGCACGGTGAAAGCGGGGTGAGTTTAGCGTTCCCAGCAGCGACACAGTTCTACGCACGGGATCCGATTGAAGAGTGTCAAACAGTTCAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGAAATCTCATGGGGACACACTTGCTTCATGATTTGGtatga 1905 0.4593 MARELCEEKSKDMASSTGFFYSDVSSNNPTHLMNHIQGFVTDPEMFNLTTGMEMIGFSKNLQPHSSESNGAMWKSFFGKPGQHAGPSSSKTMNESSSNYYNHHEYNSNNNNNKQDFTSGISETSSENLIVGGGHDSSAPWQENRLMVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTSHQQHLSDFVSREGMFGKSVTAQQQQQQMLQDGYLSTNSKAVNIYQGHFLIKNSKFLVPAQELLNEFCSLGTKENDVAKIKNKQWEEGGGGSSKNHSLSSLEFVELQKRKTRLLSLLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMDQIQATRKAMGEKDPVAPGTTRGETPRLRIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYMEEEKEQQNDVALGSSENIPEEDQKASDEKPTQGRLIRIDSECVSSIVNNQNDTKSGKSVQNDERMNNNAETFGCVELNFSSYTHESSSGGGVSLTLGLQQHGESGVSLAFPAATQFYARDPIEECQTVQYSLLDGEGQNMPYRNLMGTHLLHDLV 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02455 634 MobiDBLite consensus disorder prediction 499 513 - -
Cca09g02455 634 SMART prehox3 235 361 IPR006563 -
Cca09g02455 634 MobiDBLite consensus disorder prediction 82 119 - -
Cca09g02455 634 CDD homeodomain 412 472 IPR001356 GO:0003677
Cca09g02455 634 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 594 - -
Cca09g02455 634 MobiDBLite consensus disorder prediction 71 119 - -
Cca09g02455 634 SMART HOX_1 412 476 IPR001356 GO:0003677
Cca09g02455 634 Gene3D - 415 491 - -
Cca09g02455 634 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 594 - -
Cca09g02455 634 ProSiteProfiles 'Homeobox' domain profile. 409 472 IPR001356 GO:0003677
Cca09g02455 634 MobiDBLite consensus disorder prediction 480 513 - -
Cca09g02455 634 Pfam Associated with HOX 241 359 IPR006563 -
Cca09g02455 634 Pfam Homeobox KN domain 429 468 IPR008422 GO:0003677|GO:0006355
Cca09g02455 634 SUPERFAMILY Homeodomain-like 413 479 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02455 Cca-Chr9 50010304 50014244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02455 93 634 Homeobox Transcription Factor Family AT5G41410 46.865 4.99e-143 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca09g02455 POX 8.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02455 - - gmx:100787954 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01809 06 33505879 33509220 Cca09g02455 09 50010304 50014244 PCT