Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02454 atgaggcatgagAATAAGGCATTTATTTTTGAGCAATTAATGCGAGTGTTGGGTTTTTTATCCGAGTCCCACTCCCACCTCACAGCTCACACACACGTCTCGTTTCTACCGCCATTTATTAATTCCTCTCCTGCGTCGTTCCTGCAATGCGCTAAAAGACAAGAAGAAGAAGAACAACATTGGATGGCAGCGACAACTACAACTTTCCTCAAACTTCAAAACCAGCCCACCAAGCCCAAACGACGCAAGTATCGCCAAACCACCATCTCAGCTTCCGCCTCTCCAAACAACACCGAACCTCAACCCGAACCTGCATTGCCCCAATCTCCCTCCGCATACACCCACAGGATCCCAACAATGGACTTCGCCCATTCCTCCCCAACGGCCAACGGCCACCACTCGGCCCAGCCCCAGcaggcccaggcccaggcccaggcccaggACCCCTTCCCCTCCAGCTTCTCCAAGTTCAACTCCGCCCTCACCGCGGGCCTCCTCAACCCAATGTCCCCCCCGCCCGACAAGACCCGATCGAGCCCAACCCTCTTCGAAATGATGGCCAGCGAGCCCGACATCCACCACCGCCCCAACCAGATCCCTCCCAACAACACCGCCGCCTCCTCCCTCCAGAAGCCCCAAATTCAGGTCCTCGATCGCCACGCTCTCATGATGCAGCGCATTTCGGACCTCCTCGGCTCTCGCAGCCCCGGTAACCAGTTCAACGACGCCGTTTCCAGCGACATCAAGCTCACTCTTAGCTCCAAAGATGGAATTACCGTCTCCATGAATGTCCATCGCCAAATCCTCGTCGCCCATAGTAGATTCTTCTCCGTCAAGCTCTCCGATCGCTGGACCAAGCACCAGCAACAGCGCTCGCCGGTGCCCTACGAAGTTGAAATCGCCGATTGCGATGACGTCGAGGTCTACATCGAGACTTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTCATGAGGGAAGATGTCTCCAGAGTTCTCGGTATCTTGAAGGTTTCGGCTGCGATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACTTGGAAGCGGCACCGTGGGCGGAGGATGAGGAGGAGAAGGTGGCGTCACTGCTGTCTGAGCTTCGTCTTGAAGCAGTTGGAGCTGGGGAGGTTTTGAAGAGGGTTTCGACGGATGTTGCTAATGGAAATGAAGAGGGGAGTGATAATGAGGAGGTTCTTCTTAAGCTTATTCGTGTGGTTCTTGAAGGGAAGGATGAGAAGGCCAGGCGGGAGATGAAAGGGTTAGTGTCAAAGATGCTGCGTGAGAATTCTTCTCAGAATGATCTTCGGAAGGAGTCATTGTACTTAGCGTGTGATGACTGCCTGCAATTACTTCGTCGCCACTTTTTGCAGGCTGCTGCTTCAGACCTGCAGGATGTGAGTCAAATTGCCCGACAAGCGGATAATTTGCATTGGATTTTGGATATTTTAGTTGACAGACAGATTGCTGAGGATTTCCTGAAGACATGGGCGTCTCAATCAGATTTAGCTGAAGCTCATTCTAAAGTGCCAGCAGTTCACAGGTTTGAGGTTAGCAGGGTTACAGCAAGGTTGTTTGTGGGAATCGGGAAAGGACAATTGTTGGCTTCTAAAGATGTCAGGTGTTTGCTTCTAAAAACATGGCTGGTGCCCTTTTATGATGACTTTGGTTGGATGAGAAGGGCATCCAAGGGGCTTGATAGGCATCTAATTGAGGATGGTCTTAGTAACACGATTCTCACTCTGCCACTCTCCTGGCAACAGGAAATTTTGCTTGCTTGGTTTAACCGTTTCTTGAATTCTGGTGAAGATTGCCCAAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTTTGGAAGAGGAATGGAGAGCAAGAACGGACAAGACAATTACGAATTACAACTACATCAGCTGAGAACCCTTGA 1956 0.4949 MRHENKAFIFEQLMRVLGFLSESHSHLTAHTHVSFLPPFINSSPASFLQCAKRQEEEEQHWMAATTTTFLKLQNQPTKPKRRKYRQTTISASASPNNTEPQPEPALPQSPSAYTHRIPTMDFAHSSPTANGHHSAQPQQAQAQAQAQDPFPSSFSKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMASEPDIHHRPNQIPPNNTAASSLQKPQIQVLDRHALMMQRISDLLGSRSPGNQFNDAVSSDIKLTLSSKDGITVSMNVHRQILVAHSRFFSVKLSDRWTKHQQQRSPVPYEVEIADCDDVEVYIETLRLMYCKDLRKKLMREDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLEAVGAGEVLKRVSTDVANGNEEGSDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLRENSSQNDLRKESLYLACDDCLQLLRRHFLQAAASDLQDVSQIARQADNLHWILDILVDRQIAEDFLKTWASQSDLAEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSWQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQERTRQLRITTTSAENP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02454 651 MobiDBLite consensus disorder prediction 121 156 - -
Cca09g02454 651 Gene3D Potassium Channel Kv1.1; Chain A 225 359 IPR011333 -
Cca09g02454 651 Pfam BTB/POZ domain 240 334 IPR000210 GO:0005515
Cca09g02454 651 MobiDBLite consensus disorder prediction 68 156 - -
Cca09g02454 651 PANTHER OSJNBA0011J08.25 PROTEIN 77 649 - -
Cca09g02454 651 ProSiteProfiles BTB domain profile. 246 325 IPR000210 GO:0005515
Cca09g02454 651 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 77 649 IPR038920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02454 Cca-Chr9 49987718 49990633 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca09g02454 BTB 0.00034 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02454 - - ccaj:109800730 1286.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02454 09 49987718 49990633 Cca03g00165 03 2557156 2559408 PCT