Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02453 ATGGGTTTCCCAGTGGCAGTTGGGTACACGGAGGTCCTCTTCCCGAAGGTCCTCCTCCACATCCTCTCCCTCCTGGGCCTCCTCAGGACCCTCCTCCGCTTCATGGGCCTCCACCACTTCCCGGATGCCGACATGAAGCAGGCCCACTTGGAATCCCTCCCCCTCGTCAACTTCATGGACCTGGCCGATGCCCATGCCCAGAGCTGTGCGGTGTGCCTCACTGAGTTCGAGGAAAACGATGAGATCAGACGGCTGGCGAATTGTGGGCACATATTCCACGGAGGATGTCTGGAGCGTTGGATGGGCTACGATCAGAGAACCTGCCCTCTCTGCAGAACAGCCTTCAAAGCAGATCATAATCATACACTCTGGGTTGCGTCTCCAATCCCTCAACTTTACCTTCATTTCCCTGCTTTCTAG 420 0.5667 MGFPVAVGYTEVLFPKVLLHILSLLGLLRTLLRFMGLHHFPDADMKQAHLESLPLVNFMDLADAHAQSCAVCLTEFEENDEIRRLANCGHIFHGGCLERWMGYDQRTCPLCRTAFKADHNHTLWVASPIPQLYLHFPAF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02453 139 ProSiteProfiles Zinc finger RING-type profile. 69 112 IPR001841 -
Cca09g02453 139 SMART ring_2 69 111 IPR001841 -
Cca09g02453 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 118 IPR013083 -
Cca09g02453 139 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 133 - -
Cca09g02453 139 CDD RING-H2 69 112 - -
Cca09g02453 139 SUPERFAMILY RING/U-box 49 118 - -
Cca09g02453 139 Pfam Ring finger domain 68 112 IPR001841 -
Cca09g02453 139 PANTHER BRH1 RING FINGER PROTEIN 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02453 Cca-Chr9 49974362 49974937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02453 1 127 C3H Transcription Factor Family AT1G63840 46.154 1.62e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02453 K16281 - ccaj:109801465 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01807 06 33471157 33472129 Cca09g02453 09 49974362 49974937 PCT