Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02451 ATGTCTTCTGATCTCTATGCTTTTGACACCAGCTTCCACACACATCATTCAAACACTGATGGAGTTGGAGACCTTCCTTTTCTCTCAGACTCTCTTCCTTTCTTCCCCAATTCTCCCACTTCAAATGCTCCTCCTTCTCTCGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCCCACTTGGAAAGCCTCAGCCTTTACCATGCCAACCGCGTGCAGCCTCTGTCCAATGGCCAGAACTTGGCCACTGAACTCGGAAGCTTCACGGCTGTTGATGGCTCCCAAGTGAAGAGTGAGGAATGTCAAGTGGCTGTTGACTGTGTCTACGCTCAGCAACTACTTCCTCATAGCTATAGTGGGGCCGAAAATTTCTCCAAGTACATGCAGAGGAGCTTCAGTAGCAACTCTTTTGAAGGAAAACCCGGTTTTCTGTCACAACCTTATAGTGATGCTCTCCTGGATTCTCCTAATTTTCAAAGGCATGACATGAGTTCCCCTGATGACAGTCTCTTCGGTGGACAAATGAGAAGGGTTTGCAGCACCGGAGATTTGCAGAACATGAAGGGAAATCACATGTCTCCAACGGAGGCGCCGTTGTTGGAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCAAAGAGAACACAGAGGAACTTCAACAAAACCATTAAGTATGCATGCCGAAAGACACTAGCCGATAATCGACCACGCATACGTGGCAGATTTGCTCGCAACGACGAGACCAGCGAGACTCCCAAGGCTTCATGTTCCACCCGGGATGAAGATGACGTCGATTTCTGGATTGAAGAATTGCGATTGCATGAAGAGCAAGACGATGTAACAGTGGGGGCAGAACAATATTTGAGAAGTTTTGGAGCTAGTCAATTTCAGTACGGTGGCTTTTGA 945 0.4709 MSSDLYAFDTSFHTHHSNTDGVGDLPFLSDSLPFFPNSPTSNAPPSLDPFSPSFFSFSPPHLESLSLYHANRVQPLSNGQNLATELGSFTAVDGSQVKSEECQVAVDCVYAQQLLPHSYSGAENFSKYMQRSFSSNSFEGKPGFLSQPYSDALLDSPNFQRHDMSSPDDSLFGGQMRRVCSTGDLQNMKGNHMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDETSETPKASCSTRDEDDVDFWIEELRLHEEQDDVTVGAEQYLRSFGASQFQYGGF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02451 314 PANTHER CCT MOTIF FAMILY PROTEIN 42 311 - -
Cca09g02451 314 Pfam CCT motif 216 258 IPR010402 GO:0005515
Cca09g02451 314 ProSiteProfiles CCT domain profile. 216 258 IPR010402 GO:0005515
Cca09g02451 314 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 42 311 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02451 Cca-Chr9 49955262 49958479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02451 212 264 C2C2-CO-like Transcription Factor Family AT5G24930 50.943 1.72e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca09g02451 CCT 9e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02451 - - gmx:102665661 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01805 06 33454244 33456286 Cca09g02451 09 49955262 49958479 PCT