Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02448 ATGGAAGGATGGTCAACATTCTCAAATGGGTCTTCCTTAGATTGCCCTGGAGTTGAAACTGTTGGTGCATTTCCTGGTAACGGCTGTTGCCTTGGAAAAGACCATGTTGATAATGAAGCCGACTGTGACAAACTTAAACAAAGATGTTTGTTCTATAAACTTTTTCCAGTTTACCTGAAGGATAATTGTTCTAAAGGTGTGGTTCGGCCTTTGCCGGTTTTGATCGATGGTCACCAGCTAGATTTGTACAAATTGTTTTCCATTGTGAAGGAAAGAGGTGGGTATGCCGTGGTGGCGAAAAAAAGATTGTGGGGTTCTGTGTCCAAGGAATTGGGTTTGAACCTTAAAGTTTTCTCATCGGTGAAATTAGTTTATGATAAGTATCTGAATGATTTTGAAAGGTGGCTCAAGCAAATTTTTGAAGAGAAGAAATCAAAAACAGGGAATAATGAGTGTGATGGGGATTTTAAGTGGTTGCCATTGGATGTAGAGAAAGATTTCAGAGGCCTGTTATGTCCAAATCTAAAGGACAAAGATGTTGATGAACTTGTCAAGTCAGAATCAAATAAAATTAAGAAAGATACTGATTTTGTTAACTGCAAGAATGATATTAATTTATTGGACACCAAAGATCAAAAGAATAAATCTGAGGATGTCCAACACAATGGTGGTGATAATGATGAAAAAATTTGTAATGGAGTTAAGGTTGATCCTACAACCTTGGGTGCAGAAGGTGCTGTGAAGAAATTAAAATCTCGCAAACGCAAGCGGGAAACGTTATCTGGCATGCTAATCTGGATGAAACATATTGCAAAGTATCCTCTCGATCCTTTAGCTCAACCAATACCAAAACCATCAAAGTGGAAAGGGTATAAAGGCCAGGACATTTTTGGCCAATTTCTGAGGGCAAGGGAAGCTCTGTTGCCGAGACAGCATGAAGAACCAACCAGTGGACTGTCTTTTTTGCAGAAACAGAAGATGCACCCTGTCATGTATGAGGATCGCGCTTCTCTTGGTCGCCATGCTACAGGGAAATTGAGATGTAGTAAAAGGCTGCCTGCCTTTGTTAAATCTAAGTCATGCTCTTGCTGCAACGGAAAAAGATTGACAGGTTCACTCAATATGGAGGTAGAAAAATGTCCTCTGGAGAAAACAACTGAAACACTAGATGTATTGACTGCAAAAACAATATCTGAACCATCTGGGGGTGAGTCTCTTGAAAAGCAAGTTTCTGTAGGTCCTCGTTTTCAAGCAGAAGTCCCGGAATGGACTGGTGTGGTTTCTGAGAGTGACTCTAAATGGTTAGGCATACAAATATGGCCTTTAAAACATGACTCAGAACCTACTCCTGAAACAGATATTGGGAGAGGAAGACAAGAGAAGTGTAACTGCGAATTTCAAGGTTCTGTTGCGTGTGTTAGATTACATATTGCTGAAAATAGGATGAAATTGAAGCTTGAATTGGGTTCTGTATTTTATCATTGGGGATTTGATCGTATGGGTGAGGAAGTTTCTCTTCAATGGACAACTGAAGAAGAGAAAAAATTTAAGGATATCATGAGATCAAATATTTCCTCCCAAAATAAATATTTTTGGAACAATCCATCCAAATACTTTACAGGAAAGACTAGAAAAAACTTGGTGAGCTATTACTTCAATGTATTTCTTATTCAACTAAGAAGCTACCAGAATCGGGTGACTCCAAAGAATGTTGATAGTGACGATGATGAAGTACAATTTGGATCTTTAGGTGATGGTTTTCGGATGGAAGCTGTCAAGGGTCCTGGTTATAAGATCCCGGATTGTTCTCTGAACGAACAGTGCGCTGATTTGGAATATTGGAGTAGACATGATTAG 1857 0.392 MEGWSTFSNGSSLDCPGVETVGAFPGNGCCLGKDHVDNEADCDKLKQRCLFYKLFPVYLKDNCSKGVVRPLPVLIDGHQLDLYKLFSIVKERGGYAVVAKKRLWGSVSKELGLNLKVFSSVKLVYDKYLNDFERWLKQIFEEKKSKTGNNECDGDFKWLPLDVEKDFRGLLCPNLKDKDVDELVKSESNKIKKDTDFVNCKNDINLLDTKDQKNKSEDVQHNGGDNDEKICNGVKVDPTTLGAEGAVKKLKSRKRKRETLSGMLIWMKHIAKYPLDPLAQPIPKPSKWKGYKGQDIFGQFLRAREALLPRQHEEPTSGLSFLQKQKMHPVMYEDRASLGRHATGKLRCSKRLPAFVKSKSCSCCNGKRLTGSLNMEVEKCPLEKTTETLDVLTAKTISEPSGGESLEKQVSVGPRFQAEVPEWTGVVSESDSKWLGIQIWPLKHDSEPTPETDIGRGRQEKCNCEFQGSVACVRLHIAENRMKLKLELGSVFYHWGFDRMGEEVSLQWTTEEEKKFKDIMRSNISSQNKYFWNNPSKYFTGKTRKNLVSYYFNVFLIQLRSYQNRVTPKNVDSDDDEVQFGSLGDGFRMEAVKGPGYKIPDCSLNEQCADLEYWSRHD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02448 618 Pfam ARID/BRIGHT DNA binding domain 58 133 IPR001606 GO:0003677
Cca09g02448 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 612 - -
Cca09g02448 618 MobiDBLite consensus disorder prediction 211 232 - -
Cca09g02448 618 SUPERFAMILY ARID-like 46 137 IPR036431 GO:0003677
Cca09g02448 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 612 - -
Cca09g02448 618 Gene3D - 31 149 IPR036431 GO:0003677
Cca09g02448 618 ProSiteProfiles ARID domain profile. 45 137 IPR001606 GO:0003677
Cca09g02448 618 SMART ARID_2 42 133 - -
Cca09g02448 618 SMART bright_3 46 138 IPR001606 GO:0003677
Cca09g02448 618 CDD ARID 51 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02448 Cca-Chr9 49902764 49909969 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca09g02448 ARID 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02448 - - gmx:100819320 959.903