Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02441 ATGCCGTCATGGTGGGGAAAGTCTTCTTCCAAAGAGGTAAAGAAGAAGCCAAGCAGGGAAAGTATTATTGATACAATACAGCGGAAATTAAAAAATGCTTCTGAAGAGAAGTGCAATAATAATTCAGGAAGATCGAGATATCTTGATGATGCTATCTCCAAGAAGGGATCTAGATCTCTCACACCTTCAAGATCACCATCACCCACTACACATGTGTCACGCTGTCAAAGTTTTGCAGAAAGGCCTAGTTCTCAGCCACTCCCATTACCAAGGTCACACCTTCCTGCTGTTGTTGATGCAACTTCTGGACTTATTTTATCATCAAAACTGGAAAGAGCCATAGGTTCTAAGCCATCTCTACATTTTCCCCTTCCAAAACCTGGTTTTGTATCTAACAAGGAAGAGCCTACATATGCGGAAGGAGATATAGGCACTGCATCTGTTTCTAGTGACAGCTCAGTTGATAGTGGCAACTCATTTGATTCGCCGCATATTGTTAGTCCTCTGGCATTTGACTATGAAAATGGAAAAAAAGCCAACATTAACAGTTATTTCAGTGTGGTGCACAAGAATCAACCAGTTACTACTATCCAAAGTAACTCAGGAACATCTTCGAGACCAGCTCCTCAATTATGCAATAATAAGCCTTTATCTACCTCACCAAAAGGAGGCCCTTTACATCTGCAAAATCTGCAAATAGCTCACCCAGGTGGTTTGTGCAGTGCTGCAGATAGTTCAATGTCAAGTCCTTCTAGAAGCCCGATGGGAGCATTTGGTACAGAGAAAATGTTGAAATCTGGGTTACGGACAGGAAAGCCTTATTCAGATATAGCTTCTGGGCACTGCTCTAGTCTGGTTTCAGGCCATAATTTTGGTCATATTTCAGTTGGTGGGGATCTGTCAGGACAGATGTTTTGGCCACAGAACAGGTGTAGCCCCGAGTGTTCTCCAATACCAAGTCCCAGAATGACAAGCCCTGGTCCTAGTTCCAGGATACAAAGTGGTAGTGTGACCCCTCTGCATCCACAAGCTGGTGGTACTGCAGCAGAAGCACCTACAAGACGTCCTGACGATATGAAACAACAAACTCATCAGTTACCAATTCGTCCAATAACAGTCACTAATCCTTATCCGTTTTCTCCAACCTATTCAGCATCCACAACTCCTTCAGCCCCTCATAGTCCTTCCGGAGCAGAAAATCCAACAGGCCCGGGTCCACGCTGGAAAAAGGGGCAGTTGCTTGGGAGGGGGACGTTTGGACATGTATATCTTGGTTTCAACAGAGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTCAAGATGATGCTAAATCAAGGGAAAGTGCACAGCAACTTGGCCAAGAAATTGCTCTTCTCAGTGGGTTGCGGCATCCAAATATTGTTCAGTATTATGGATCTGAGACGGTAGATGACAAACTTTATGTGTACTTGGAGTATGTCTCTGGTGGGTCAATCTATAAACTGGTTCGTGAATATGGCCAGTTAGGTGAAATTGCTATTCGTAATTATACTCGGCAAATTCTGTTAGGACTTGCATATTTGCACGCTAAGAACACTGTTCACAGAGACATTAAAGGAGCAAATATATTGGTGGACCCTAGTGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAACATATAAGCGGGCCATCTTGTCCATTTTCTTTCAAGGGAAGCCCTTACTGGATGGCACCCGAGGTTATAAAAAATTCAAATGGTTGTAATCTTGCGGTTGATATATGGAGTCTGGGATGCACTGTTTTGGAGATGGCGACAACAAAACCTCCTTGGAGCCAGTATGAAGGGGTTGCTGCTATGTTTAAAATTGGAAACAGCAAGGAACTTCCTACAATTCCAGATCATCTATCAGAAGATGGAAAAGATTTTGTTATGCTTTGTTTGCAAAGGGATCCTGAAAATCGTCCCTCAGCTGCTCAACTTCTAGAGCATCCATTTGTTAAAAATGCAATGCTAGAAAGATCCATTTTAACTGCCCTTCCTGCAGAAGCTCCACCTGCTATAATAAATGCTGTGAAATCCCTGGGCATTGGACCTGCAAAACATAATTTATGCTTAGACTCAGAAGCGGCTGGGATCTATCCACTTAGAAGCTTGAGAACTGGTTTTGGATCAAGTGATGTGCATCCGTCAAGGAACATCTCTTGTCCAGTTTCTCCCACTGGGAGCCTACTTTATAAATCGTCGCATACAAGTGGATGGATGTCTCCTTCTCCAATATCTAGCCCTCATACTGTGTCTGGCTCATCTTCGCCACTAACCAGTGGTGGTGGTGCTATTCCATTTCATCAGACAAAGCAACCAATATTCTCCCATGATGTTATGGGTATGATTCAAAAGTCCCGGAATGATTTTTATTCAAACGGAAACACTGCTCATCCGGAGTATAAGCATGAGCAGTTTGGGAGGAACTTCCAAACTACACATGCTTGCCGTGATGTAGTTTCTTCTGATAATGATGCTCTTCCAAACCATTCTATGAGGTTTGTCCAGGGAGATCCAATAGAAATTCGTGATGGGAAGTCATACTTGGCTGATTGTGTATCACAACAGCTGTTGAGGGATTATGTACGGCTAAATGCATGCCTGGGTATTATGGAGGAAGCCCCAAAGCGTGATCGCTTTAATGGCTTATGA 2688 0.4338 MPSWWGKSSSKEVKKKPSRESIIDTIQRKLKNASEEKCNNNSGRSRYLDDAISKKGSRSLTPSRSPSPTTHVSRCQSFAERPSSQPLPLPRSHLPAVVDATSGLILSSKLERAIGSKPSLHFPLPKPGFVSNKEEPTYAEGDIGTASVSSDSSVDSGNSFDSPHIVSPLAFDYENGKKANINSYFSVVHKNQPVTTIQSNSGTSSRPAPQLCNNKPLSTSPKGGPLHLQNLQIAHPGGLCSAADSSMSSPSRSPMGAFGTEKMLKSGLRTGKPYSDIASGHCSSLVSGHNFGHISVGGDLSGQMFWPQNRCSPECSPIPSPRMTSPGPSSRIQSGSVTPLHPQAGGTAAEAPTRRPDDMKQQTHQLPIRPITVTNPYPFSPTYSASTTPSAPHSPSGAENPTGPGPRWKKGQLLGRGTFGHVYLGFNRESGEMCAMKEVTLFQDDAKSRESAQQLGQEIALLSGLRHPNIVQYYGSETVDDKLYVYLEYVSGGSIYKLVREYGQLGEIAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPSGRIKLADFGMAKHISGPSCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSEDGKDFVMLCLQRDPENRPSAAQLLEHPFVKNAMLERSILTALPAEAPPAIINAVKSLGIGPAKHNLCLDSEAAGIYPLRSLRTGFGSSDVHPSRNISCPVSPTGSLLYKSSHTSGWMSPSPISSPHTVSGSSSPLTSGGGAIPFHQTKQPIFSHDVMGMIQKSRNDFYSNGNTAHPEYKHEQFGRNFQTTHACRDVVSSDNDALPNHSMRFVQGDPIEIRDGKSYLADCVSQQLLRDYVRLNACLGIMEEAPKRDRFNGL 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02441 895 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 808 - -
Cca09g02441 895 MobiDBLite consensus disorder prediction 1 92 - -
Cca09g02441 895 MobiDBLite consensus disorder prediction 312 411 - -
Cca09g02441 895 MobiDBLite consensus disorder prediction 325 341 - -
Cca09g02441 895 SUPERFAMILY Protein kinase-like (PK-like) 406 753 IPR011009 -
Cca09g02441 895 Pfam Protein kinase domain 409 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02441 895 MobiDBLite consensus disorder prediction 365 397 - -
Cca09g02441 895 ProSiteProfiles Protein kinase domain profile. 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02441 895 SMART serkin_6 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02441 895 CDD STKc_MEKK1_plant 407 664 - -
Cca09g02441 895 MobiDBLite consensus disorder prediction 143 159 - -
Cca09g02441 895 MobiDBLite consensus disorder prediction 56 83 - -
Cca09g02441 895 MobiDBLite consensus disorder prediction 9 35 - -
Cca09g02441 895 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 808 - -
Cca09g02441 895 MobiDBLite consensus disorder prediction 753 775 - -
Cca09g02441 895 MobiDBLite consensus disorder prediction 126 159 - -
Cca09g02441 895 ProSitePatterns Protein kinases ATP-binding region signature. 414 437 IPR017441 GO:0005524
Cca09g02441 895 Gene3D Transferase(Phosphotransferase) domain 1 407 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02441 Cca-Chr9 49768986 49777748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02441 1 878 MAP Kinase Kinase Kinase AT1G63700 57.542 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca09g02441 Pkinase 2.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02441 K20717 - gmx:100814422 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02441 09 49768986 49777748 Cca03g00167 03 2596145 2604291 PCT