Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02435 ATGGTTCCAGACAACATGAAGAAACAACTTGCTTTGGCTGTGAGAAGCATCCATTGGAGCTATGCAATCTTCTGGACTGATTCAACTACCCAACCAGGGATGTTGAGCTGGGGGGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGAGTAGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGAGAGAGCTATTCAAGTCCCTCAAAACTGCAGAAATCAGCCCTCAAACCAAAAGGCCTTCAGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTACTACTTGGTTTGCATGTCCTTCATATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTAGCAAAGGGTCAACCAATTTGGCTGAACAGTGCCCATTCAGCTGATTGTAGAGTTTTTAGTCGTTCTCTGCTGGCAAAGAGTGCATCAATTGAGACGGTTGTGTGCTTTCCGTTTATGGAAGGGGTTATTGAGCTAGGTACTACTGAACAGGTCTCAGAAGATTTGAGTATCATTCATCAGATCGAAACTTCTTTCTTGAATAGTCTGCACGTCAATGTTCCTAATAAGTCAGGAGCTACATTGAAATCAAGGGACCAGGAAGATCTTGCTTATGTATCATTTGATCATAATGCTTATAATGTTGAATTAACACCAGAAGTTGGATATGATATAGCCAACACAACCTCTCCTAATGGTAGTTCAAATGCACTCCAAGCCAATCAACCACTACATGAAACATTCATGGTTGAAAGAATAACAAGTGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATGGATGATGAATTGAGCAACTGTGTCCACAACTCCATGAATTCCAGTGATTGTATATCACAAACTTTAGCCAGCCCTGAGAAGATTGCTTTTACCCCCAAGTGTAACAACCCTTCAGACCCTTGTGCCCGAGATCTTCAAAAGTACAACAACCCAAAAATGACCGTAGTGGATCCTCGAAGTGATGATTGGCATTATCAGAGAGTTCTTTCTACCCTTTTGAAAAGCTCTGACCAGTTACTCATGGGAGTGCATTTGCAAAAACTTCATCAGGAATCAAGCTTTGTTAGTTGGAGGAAAGGAGGGCCAGTGGATTGTCAATGGCCTAGAACAGGAACCTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGCCTGCATGAGTCACAAGAAGAGAATGACTACAAAGAGGGAATGAGAGTAGAAGCTGATGAAATTGGCATGAACCATGTTATGTCAGAGAGAAGGAGAAGAGCAAAACTAAACGAAAGGTTTTTGACCCTTAGGTCAATGGTCCCTTCAATCACTAAGGATGATAAAGTTTCAATACTAGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGAATAAAAGTGTTGGAAGCTCAGAGGGGGGTAACGGATATAGAGACTGAGACTAGAAGATTACCACAAGATATGGTGGAGAGGACTTCTGATCATTATTTTAGCAAAAGCAATAATGGCAAGAAACCAGTGGCAAAAAAGAGGAAGGTTAGTGGTGTAGATGAGACAGGAAGAGAGATTAATTCAGATGTTCCAAAAGGAAGTTATGCTAATGATGTTACTGTGAGTACTAGTGACAATGAAATTGTGATAGAAATGAAGTGCCCCTCTAGAGCAGGAAAGCTGCTAGAAATTATGGAAGCAGTTAACAGTTTCAATGTAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGGTGAGCACTTGGTATGCCTTTTTAGTTTTTGACAaaaacttaaattcaagactatag 1875 0.4053 MVPDNMKKQLALAVRSIHWSYAIFWTDSTTQPGMLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTAEISPQTKRPSAALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRTLAKGQPIWLNSAHSADCRVFSRSLLAKSASIETVVCFPFMEGVIELGTTEQVSEDLSIIHQIETSFLNSLHVNVPNKSGATLKSRDQEDLAYVSFDHNAYNVELTPEVGYDIANTTSPNGSSNALQANQPLHETFMVERITSGTSQVQSWQVMDDELSNCVHNSMNSSDCISQTLASPEKIAFTPKCNNPSDPCARDLQKYNNPKMTVVDPRSDDWHYQRVLSTLLKSSDQLLMGVHLQKLHQESSFVSWRKGGPVDCQWPRTGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRVEADEIGMNHVMSERRRRAKLNERFLTLRSMVPSITKDDKVSILDDAIEYLKKLERRIKVLEAQRGVTDIETETRRLPQDMVERTSDHYFSKSNNGKKPVAKKRKVSGVDETGREINSDVPKGSYANDVTVSTSDNEIVIEMKCPSRAGKLLEIMEAVNSFNVDFNSVQSTEADGNLYLTIKSVVSTWYAFLVFDKNLNSRL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02435 624 Gene3D - 425 490 IPR036638 GO:0046983
Cca09g02435 624 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 189 IPR025610 -
Cca09g02435 624 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 427 476 IPR011598 GO:0046983
Cca09g02435 624 PANTHER TRANSCRIPTION FACTOR EGL1 3 607 - -
Cca09g02435 624 Pfam Helix-loop-helix DNA-binding domain 431 477 IPR011598 GO:0046983
Cca09g02435 624 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 429 490 IPR036638 GO:0046983
Cca09g02435 624 Coils Coil 466 493 - -
Cca09g02435 624 PANTHER TRANSCRIPTION FACTOR TT8 3 607 - -
Cca09g02435 624 SMART finulus 433 482 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02435 Cca-Chr9 49722028 49725541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02435 2 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.541 3.80e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g02435 bHLH-MYC_N 1.8e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02435 - - gmx:100795524 1063.14